RNA id: TCONS_00005828


Basic Information

Item Value
RNA id TCONS_00005828
length 705
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id XLOC_001917
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8709485 ~ 8715748 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGGTAAACGCGGAAAAACGAAACACAGAAGACGTGCAGGAAGTCAACAACAATGGGACCCCCTTCTGCTCAAGACTCAAAAAGAAAGCTGCTAACCCAGGCCTGTGTTTACCATTAATCCAGACCAGGTGATGTGCAACTGAGGTCAGGAGAGAGCAGAAGTCATAACCCTAATTCCACCCACCGATCAGCTCTGTCAAGTGAGTAAATGGAGCCACATGGTTTCCCAGATGTGATGTAACAGCATGTTGAATGGCGTGTCAAAATGAACATGAGACTCCCTGCTGTGACGAATTTTTATCGCAGTTGATCAATCCCCATGAAAGACCCTCCACGAAGGAGCTGTGGAGAGACTAAAGTGAGCATTGGATTTCAATAAATAGTGCGACCCGAGTGTGAAAATCTCAGAGAGAGTATCAGCATATCGGACTGGTCCTGGCAGTCTAGCCGCTGGACGGTTGACATTTGAACTTCATCGTCCTCGTGGAGCAGGTAGCTAGTCTCTCTTCTGCTCTTGTTACATTACCTTCGGCCTCCTTCTTAAATCATACCAGACATTTGTAACTCTCGCACTCCTAAAACATGATCATGGAGGGGCTTTCTGTGAACTCTGAACTCTTGTGATTGGTGTTGATTTGCTCGGGCACCTGCTGAGGCCTGTCAAACAAGCAGATCAGAAGAGATATATCTGGTTGCTGCCAGTCT

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005680 lncRNA upstream 58630 8646959 ~ 8650855 (+) True XLOC_001913
TCONS_00003761 lncRNA upstream 300610 8402096 ~ 8408875 (+) True XLOC_001907
TCONS_00003758 lncRNA upstream 446161 8252143 ~ 8263324 (+) True XLOC_001905
TCONS_00005827 lncRNA upstream 671596 8036184 ~ 8037889 (+) True XLOC_001902
TCONS_00005679 lncRNA upstream 717026 7988025 ~ 7992459 (+) True XLOC_001901
TCONS_00005681 lncRNA downstream 57688 8773436 ~ 8773659 (+) True XLOC_001919
TCONS_00005829 lncRNA downstream 406645 9122393 ~ 9125863 (+) True XLOC_001926
TCONS_00005830 lncRNA downstream 930755 9646503 ~ 9661896 (+) False XLOC_001935
TCONS_00005682 lncRNA downstream 933624 9649372 ~ 9661381 (+) False XLOC_001935
TCONS_00005683 lncRNA downstream 933856 9649604 ~ 9661896 (+) False XLOC_001935
TCONS_00003773 mRNA upstream 11698 8688678 ~ 8697787 (+) False XLOC_001916
TCONS_00003774 mRNA upstream 11705 8690936 ~ 8697780 (+) True XLOC_001916
TCONS_00003772 mRNA upstream 21591 8680730 ~ 8687894 (+) True XLOC_001915
TCONS_00003771 mRNA upstream 51801 8656417 ~ 8657684 (+) True XLOC_001914
TCONS_00003770 mRNA upstream 78124 8629275 ~ 8631361 (+) True XLOC_001912
TCONS_00003775 mRNA downstream 15240 8730988 ~ 8841038 (+) False XLOC_001918
TCONS_00003776 mRNA downstream 51793 8767541 ~ 8840961 (+) True XLOC_001918
TCONS_00003777 mRNA downstream 131285 8847033 ~ 8858205 (+) True XLOC_001920
TCONS_00003780 mRNA downstream 159447 8875195 ~ 8884205 (+) True XLOC_001922
TCONS_00003781 mRNA downstream 170021 8885769 ~ 8940896 (+) True XLOC_001923
TCONS_00003759 other upstream 366180 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003739 other upstream 1131434 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003731 other upstream 1499377 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003693 other upstream 2939873 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 3557084 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003778 other downstream 146773 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 153720 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 630648 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003802 other downstream 1010026 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003803 other downstream 1197315 9913063 ~ 9913177 (+) True XLOC_001940

Expression Profile

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