RNA id: TCONS_00003775


Basic Information

Item Value
RNA id TCONS_00003775
length 3707
RNA type mRNA
GC content 0.46
exon number 30
gene id XLOC_001918
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8730988 ~ 8841038 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAGTCGAGCGTCTGCGCCTTCAAGAGCAGGAGCCTCCATTCAGGCTCTGACAGGGAACCGCGAAGATGCTTTCTGGAGTCTATCAGTTCACACTAGCAGCACTACTAGCACTGCTGCCATGGCTGTCATGTTTCAATGTGGACGAGAAGAACAGGATGTCATTCAGTGGACCAGTGGAGGACATGTTCGGATACACTGTCCAGCAATTTGAGAACAGTGAGGGAAAATGGGTTCTGATTGGCTCTCCTTTGACCGGACAGCCAGCTAAACGGACTGGAGATGTCTACAGGTGCCGGGTTGGATCAAACAGTGACAGTAAATGTGAAAAATTCCTCTTGTCAGAAAACACAACAATCCCGAACATAAACGAAGTCAAGGAAAACATGACTATGGGGACGACGCTGGTGGTGAACCCAGACGGCAATGGCTTTTTGGCGTGTGGCCCTCAGTATGGGTACATGTGTGGAAAGCAGCAGTACATCACTGGCATCTGCTCTAACGTCAGCTCCTCATTTAAAGTCCTCAACTCCATCGCTCCAACTGTACGAGAGTGCAGTCAGGACATGGACATTGTCATAGTGCTGGATGGTTCTAACAGCATCTACCCCTGGGATCACATCACAGATTTTTTGGTCAAATTCCTCCAGAACATTGAAATCGGACCAGCCCGGGTGGGCATTGTGTCGTATGGTGATGATGTGGGCCACGTTTTCAACCTCAGCCAGTTCAGCAACACTAAAGAACTTGTTAAGAATGCTGCCGATATCAGACAAAGGACTGGCCACAAAACCATGACAGCTCTCGGCATTGATACCGCAAGGAAAGAGGCCTTTACAGTGGAGAGAGGAGCGAGACCAGGGGTCAAAAAAGTCATGGTGATCGTCACAGACGGAGAGTCACATGATCACCACAATCTGAAGAGTGTCATTGATCAGTGTCAAGAAGATGGCATCGAGAGGTTTGCTGTtgctGTCCTTGGTGATTATAATCGACAGAATAAAAGCATTGACGAAATAAAGAAGTTTATAGAAGAAATTGAATATATCGCTAGCGAGACTAAAAGTGATCATTTCTTCAATGTGTCGGATGAACGAGCTTTAGTGACTATTGTCGATACCCTGGGAAGCAAGATCTTTGCTTTAGAAGCCACATCTGGGAAGCACACCTCATCTTTTGAGATGGAAATGTCTCAGGCAGGATTCAGTGCTCACACGTCTAAAGCTGGTGTCATGCTGGGAGCTGTAGGTGCTTTCGACTGGAACGGGACCGTAGTGATGCAAGCTGGGAACGAATTTGTTGTTCCCAAAAAAAACACCTTCCACAACCCTTCTGTGCAGAGATATGAAGGCATGGCGGGATACGTAGGTTATGATGTGCAGTCGGCATACACACCCAACGGGGTGTTATACATCACTGGAGCACCACGGTTTAACCACAGTGGTCGTGTGACAGTGTACCGCTTTGATGGAGAAAATGTCACCATAGTGCAGACACTGAAAGGAGAACAGATTGGCTCCTATTTCGGCAGCGTCCTTCAAACGCATGACATCGATGGTGACAATTACACCGACATCCTCCTGGTCGCAGCTCCCATGTTTATGGGTCCTGAGCGGGATGAACAAGGGCAGGTCTACGTCTACAAACTCAACGagAGTGGGCTGTTTGAACATGAGATGACGCTGAAGCCGGTCAATCAGACGTGTTGTTCGGGTCACTCCCACAACAACTGTAAAATCGTCAGTAAGAACGAGCCCTGTGGTGCACGTTTCGGCACCGCGATCGCTGCAGTTCCCGACCTCAACCTGGACAAATTCAGTGACATAGTGATAGGATCACCTTTGGAGAATGACCACAGGGGAGCGGTGTATATTTACCACGGCTCACAGAAATCAATAAAGGAGAAGTATGTGCAGcGTATTGCAGCTGGAGGAGATGGAGAGAGCATGAAGTTCTTTGGCCAGTCGATTCATGGCATTATGGATTTGAATGATGATGGCATCATCGATGTCACTATTGGAGGAATAGGAGGAGCTGCACTTTATTGGTCTCGGGATGTTGCAGAGCTTCTCGCTGAGATGACTTTTGACCCTATTAAGATCAATCTCCAGCATACGTGTCAAGTCCATGGGAAGACCACCGTATGCGTGAAGACGAGAGTATGCTTCAAATATCGAATCAAGTCTGTTAAAGAGATGAACACTGGAACTGTCATCAGGTACAGTTTAACGCTGGACTCTCTGAGAGCGGTAGCCCGAGGACGCTTTAATGAAACAGAGGACAGGAGGCTGCAGAAGAACGAGTCCATCCGGAATAAGTTTTGCAGAGAGCACACCTTCTACACGGATAAACTGGATTTCAGAGACCCCATTATGGTGACGCTGGAATTCGGTCTAGCGGATGAAGACAAGGGTCCAGTTTTGGATGGAGAATTACCCACATCCCTCAACAAGACTGTAAGTTTTCCTCCTGCTAGAGTGGACTGTGGAAGTAATGAGAAGTGTGTTGCTAATCTACACCTACAAGCTTCTGCGAACATCTCAagTCTTCTCATAAAGAGTAACCAGGAGAAATTTTATGTCAATATCGACATCAAGAACACTGGAGACAACGCTTATAATACCAAAGTTACACTGAGCCACACTGAAAATATCAACTATGTCAAAGTGGAGCCTAAAGATAAGGACTGTGAAACTAATCATACCAGAATAGTGTGTGCAGTTGGATATCCTTTCCTTAAAACTAAGGACAGGGAAACCTTCAAAATCCAGTTTGAGCCCAATCCCTCTCTTATCCGAAAGGACATTGTTATTAATGTGACTGCTACCACTGATAGTGAGCAGTCAGATTCAGCGCTGAAACGTAACTTTGAGACCATCATCATCCCAGTGAGGCATGAAGCCAGCATGAGATTCACTGCGTATAACAAATATATGAAGGAGGACCACATCATACTGAAAGAAAAGGAGACGATACCCAGTGTTTTCAACCACACCAGTGTGATTGGGGATGAAGTAAAAATCAGCTACACGattgaGAAAGACCCTGACATGCCGAGTCCTCCAGTAAAGCTTACAATAATGTTTCCATATCAAACGTCTGCTAAAAACTTTCTGCTGTACCTGACAGATCTCAGCTACACAGCGGGCATTCGATGTTCCGCCGACTGGATTAACCCTTTGAAGATTCAACCTAGCAAACCACATTcactgaacacaaaaaaagagacCCTGAGCATCTATCTTTTGAGttgtaaagaaaaagaaaatccctgcCAGTCCTTTAGCTGCTTCATTCCTTCTGGAGACTTCAACCAGATCAACACCACTTTCAGACTGTGGCGGCCCACCTTTATTAAAGGAGAATTTTCCACCATTCACATGGCAGTTGATGCCAAGCTGGAGACCCAGAACACAGACTTGTTTGTGTTAAATGAAAACATCAAAACCAGAGAGGTAAGGATTCAAGTCACCAAAGACATACGAACTGGAATCCCACTGTGGATTATTATCCTTAGTAttctaataggacttttaatacTGGCACTTGTTATCTTCGCTTTATGGAAGGCTGGATTCTTCAAGAGAAAATCAGTTGAAGAAATGAATGAAGATAAAAAAGACACTGACTGAAGCCTGCGTCTCTGTAGCCTCCACCCCTCAGGTCAGCTTATTCTACACTGCTAAATCGAGATCACTAGAAATATAAA

Function

GO:

id name namespace
GO:0007229 integrin-mediated signaling pathway biological_process
GO:0007155 cell adhesion biological_process
GO:0008305 integrin complex cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
ko04151 PI3K-Akt signaling pathway
ko04512 ECM-receptor interaction
ko04510 Focal adhesion
ko04810 Regulation of actin cytoskeleton
ko04640 Hematopoietic cell lineage
ko05165 Human papillomavirus infection
ko05410 Hypertrophic cardiomyopathy
ko05412 Arrhythmogenic right ventricular cardiomyopathy
ko05414 Dilated cardiomyopathy
ko04147 Exosome
ko04515 Cell adhesion molecules
ko04090 CD molecules

ZFIN:

id description
ZDB-GENE-091118-115 Predicted to enable metal ion binding activity. Predicted to act upstream of or within cell adhesion and integrin-mediated signaling pathway. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of integrin complex. Orthologous to human ITGA1 (integrin subunit alpha 1).

Ensembl:

ensembl_id ENSDART00000145596

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005828 lncRNA upstream 15240 8709485 ~ 8715748 (+) True XLOC_001917
TCONS_00005680 lncRNA upstream 80133 8646959 ~ 8650855 (+) True XLOC_001913
TCONS_00003761 lncRNA upstream 322113 8402096 ~ 8408875 (+) True XLOC_001907
TCONS_00003758 lncRNA upstream 467664 8252143 ~ 8263324 (+) True XLOC_001905
TCONS_00005827 lncRNA upstream 693099 8036184 ~ 8037889 (+) True XLOC_001902
TCONS_00005829 lncRNA downstream 281355 9122393 ~ 9125863 (+) True XLOC_001926
TCONS_00005830 lncRNA downstream 805465 9646503 ~ 9661896 (+) False XLOC_001935
TCONS_00005682 lncRNA downstream 808334 9649372 ~ 9661381 (+) False XLOC_001935
TCONS_00005683 lncRNA downstream 808566 9649604 ~ 9661896 (+) False XLOC_001935
TCONS_00005684 lncRNA downstream 808611 9649649 ~ 9661896 (+) True XLOC_001935
TCONS_00003773 mRNA upstream 33201 8688678 ~ 8697787 (+) False XLOC_001916
TCONS_00003774 mRNA upstream 33208 8690936 ~ 8697780 (+) True XLOC_001916
TCONS_00003772 mRNA upstream 43094 8680730 ~ 8687894 (+) True XLOC_001915
TCONS_00003771 mRNA upstream 73304 8656417 ~ 8657684 (+) True XLOC_001914
TCONS_00003770 mRNA upstream 99627 8629275 ~ 8631361 (+) True XLOC_001912
TCONS_00003777 mRNA downstream 5995 8847033 ~ 8858205 (+) True XLOC_001920
TCONS_00003780 mRNA downstream 34157 8875195 ~ 8884205 (+) True XLOC_001922
TCONS_00003781 mRNA downstream 44731 8885769 ~ 8940896 (+) True XLOC_001923
TCONS_00003782 mRNA downstream 127165 8968203 ~ 8975980 (+) False XLOC_001924
TCONS_00003783 mRNA downstream 127186 8968224 ~ 8976823 (+) True XLOC_001924
TCONS_00003759 other upstream 387683 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003739 other upstream 1152937 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003731 other upstream 1520880 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003693 other upstream 2961376 5744923 ~ 5769612 (+) False XLOC_001866
TCONS_00003679 other upstream 3578587 5151349 ~ 5152401 (+) True XLOC_001855
TCONS_00003778 other downstream 21483 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003779 other downstream 28430 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003791 other downstream 505358 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003802 other downstream 884736 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003803 other downstream 1072025 9913063 ~ 9913177 (+) True XLOC_001940

Expression Profile

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