RNA id: TCONS_00003782


Basic Information

Item Value
RNA id TCONS_00003782
length 2181
RNA type mRNA
GC content 0.47
exon number 5
gene id XLOC_001924
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 8968203 ~ 8976823 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACAGTCAGTGAGCGCCAAGCATCGGGAGAACATCTGTCCGTCTGCAGTCCGTCTCCAGCGCGCGCGTCTCTCCACTGTTTCTGAGGATGCGGCAGTTCCCGCAGCTCCGCCAGGGCGTCCTCGCGCTCCTCATCTGGTTCGCGCACTTGATGGAGGAGCAGAAAGTACAAGCCGGCAATTGCTGGCTTCAGCAGGGCAAGAACGGGAGATGCCAGGTTCTCTACATGTCTGGGATGAGCCGGGAGGACTGTTGTAAAAGTGGTCGTTTGGGTACAGCATGGACTGAGGAGGATGTACCCAATAACACGCTCTTCCGGTGGCTGATCTTCAATGGTGGAGCACCAAACTGCATACCTTGTAAAGAGACTTGTGATAATGTGGATTGTGGTTCTGGAAAGAGGTGCAAAATGAACAAGCGAAACAAACCCCGCTGCGTTTGTGCGCCAGACTGCTCCAATGTCACCTTTAAAGGGCCTGTGTGTGGCTCCGATGGGAAAACATACCGGAATGAGTGTGCCCTCCTTAGGGCCAAGTGCAAAAGGCACCCTGACCTGTCTGCGCAGTACCAGGGAAAATGCAAAAAGTCGTGCTATGACGTGCGCTGTCCTGGAAGCTCAACATGTGTATTGGACCAGACCAACAACGCCTACTGTGTGACCTGCAACCGCTTCTGCACTGAGGTGACCTCACCGGAGCAGTACCTGTGTGGCAATGACGGGAAAGTGTATGCCAGCGCCTGCCACCTTCGACGGGCCACGTGCATCATGGGACGGTCCATCGGAGTGGCCTATGAGGGGAAATGCATAGATGCCAGGTCCTGTAAAGACATCAACTGCCGAGAGGGGCGGAAATGTTTGTGGGACAAGAGGACAGGACGGGGACGCTGTGCGGTGTGCGAGGACACCTGTCCCGAAAGTCGCCCAGGCGATAGTGTCTGCGCCAGCGATAACACCACCTACCCGAGCGATTGCGCCATGAGGCAGGCCGCCTGCGCTTTGGGGCTCGTCCTGGAAGTCAAACACTCGGGCTCCTGCAACTGTAAGTAGAGGATGCCAAACCTGGTCACACTCATATCCTGCATTCCCTCCCCCTGCCGAAAAACACCCCCATTTCTTGCCCCCTTCCCATTGCTAACCCAACAAGGAACACAAGGACTGTCAGAAAGAGAcattctgtgtttttttaactCAGAGGCAATGATGCATTAGAAGTGTCTGGGACGCTCTCATCTATCTTAAATCTTTGAGGTCAAGATTGGAAGGATTTCCATTTGGGATGCGAGAGTTTTGACCATGCTGCTCCTCCGCTTTGTGCGTCAGAGACAGAAACGTGACGAGTCGTGTGGAAAGTGCATAGGGACGTAAACTCACTTAGCGTGTTTGTTTCTTGTTGTCTCAGCCTATGGTTGACCTTTTTTTTGTGATGATCACAGATGAATGGACAAAGAAAAACAAACCTGATGCCATTACAGGCAGAATTTTGCCAGTTTTAGAGGCAGGAATGCCAAAAAAAGAGGCAAACATTCTTAGAGTTTAAGATATTGGgacaaaaacatgtattttaatatatatagatatatttctgaaacatattttaattacatttcttaAGACGGTCgctgtgctgtgtttttatgAGTTAACATTTGGACCTTTGTCTATCGTCTTTGCATAATAAAGGGAAACGTAAGCATTTTTTCCACTGTCGATTTGTTATGTCCATTTTGCCTATTTAGATGTTTCTtcacttaaaatgtttttccACAACACCACTTCTTTGGTTCTGACCTTATAATAGTTCAAACGTGGGACATAACAAATGTCATGTGGAAAAAATGTGATTCTGTGTTTCAGTATGAACATGTTTAGATGGTTCACTGATCATTTGTTAATGGCTTAAAGCAGAACCATCTTTCAGCCGTCCCGGTCTGTGTGTGGTATTGACAAATCATCTTCCAAAAAGCGATATTTTTGTTTATAAGAAGGGATTGCGTCATGTCTCTTTGCTTGATGTTATTTGATTTTATACAAGAAAACGCTAATAAAAGACAGGGGGTAAGGCATGGTTCCATAGCAAAACTCAATCCCACCCTCTCCTTTCACTCTGAGCTGTGATCCCACCACCTTTTGTGAATTGCAAAGCATCATTAGAGATGCTTtggaagacaaaaacaaaaaaaa

Function

GO:

id name namespace
GO:0030154 cell differentiation biological_process
GO:0032926 negative regulation of activin receptor signaling pathway biological_process
GO:0007275 multicellular organism development biological_process
GO:0030510 regulation of BMP signaling pathway biological_process
GO:0005615 extracellular space cellular_component
GO:0048185 activin binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-031118-139 Predicted to enable activin binding activity. Predicted to be involved in cell differentiation; negative regulation of activin receptor signaling pathway; and regulation of BMP signaling pathway. Predicted to be active in extracellular space. Is expressed in several structures, including brain; heart; integument; pharyngeal arch 3-7 skeleton; and somite. Human ortholog(s) of this gene implicated in polycystic ovary syndrome. Orthologous to human FST (follistatin).

Ensembl:

ensembl_id ENSDART00000110443

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005681 lncRNA upstream 194544 8773436 ~ 8773659 (+) True XLOC_001919
TCONS_00005828 lncRNA upstream 252455 8709485 ~ 8715748 (+) True XLOC_001917
TCONS_00005680 lncRNA upstream 317348 8646959 ~ 8650855 (+) True XLOC_001913
TCONS_00003761 lncRNA upstream 559328 8402096 ~ 8408875 (+) True XLOC_001907
TCONS_00003758 lncRNA upstream 704879 8252143 ~ 8263324 (+) True XLOC_001905
TCONS_00005829 lncRNA downstream 146413 9122393 ~ 9125863 (+) True XLOC_001926
TCONS_00005830 lncRNA downstream 670523 9646503 ~ 9661896 (+) False XLOC_001935
TCONS_00005682 lncRNA downstream 673392 9649372 ~ 9661381 (+) False XLOC_001935
TCONS_00005683 lncRNA downstream 673624 9649604 ~ 9661896 (+) False XLOC_001935
TCONS_00005684 lncRNA downstream 673669 9649649 ~ 9661896 (+) True XLOC_001935
TCONS_00003781 mRNA upstream 27307 8885769 ~ 8940896 (+) True XLOC_001923
TCONS_00003780 mRNA upstream 83998 8875195 ~ 8884205 (+) True XLOC_001922
TCONS_00003777 mRNA upstream 109998 8847033 ~ 8858205 (+) True XLOC_001920
TCONS_00003775 mRNA upstream 127165 8730988 ~ 8841038 (+) False XLOC_001918
TCONS_00003776 mRNA upstream 127242 8767541 ~ 8840961 (+) True XLOC_001918
TCONS_00003784 mRNA downstream 116835 9092815 ~ 9097996 (+) True XLOC_001925
TCONS_00003785 mRNA downstream 183299 9159279 ~ 9184667 (+) True XLOC_001927
TCONS_00003786 mRNA downstream 219210 9195190 ~ 9219663 (+) True XLOC_001928
TCONS_00003787 mRNA downstream 246496 9222476 ~ 9235445 (+) False XLOC_001929
TCONS_00003788 mRNA downstream 246496 9222476 ~ 9235446 (+) True XLOC_001929
TCONS_00003779 other upstream 88077 8869468 ~ 8880126 (+) False XLOC_001922
TCONS_00003778 other upstream 99308 8862521 ~ 8868895 (+) True XLOC_001921
TCONS_00003759 other upstream 624898 8343188 ~ 8343305 (+) True XLOC_001906
TCONS_00003739 other upstream 1390152 7573316 ~ 7578051 (+) True XLOC_001890
TCONS_00003731 other upstream 1758095 7083771 ~ 7210108 (+) False XLOC_001887
TCONS_00003791 other downstream 370416 9346396 ~ 9348506 (+) False XLOC_001931
TCONS_00003802 other downstream 749794 9725774 ~ 9725891 (+) True XLOC_001937
TCONS_00003803 other downstream 937083 9913063 ~ 9913177 (+) True XLOC_001940
TCONS_00003821 other downstream 1825725 10801705 ~ 10803356 (+) False XLOC_001951
TCONS_00003825 other downstream 1846775 10822755 ~ 10823448 (+) True XLOC_001951

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_06045069_06049887.mRNA True 1427 mRNA 0.50 6 CI01000304 6044905 ~ 6049971 (-)