RNA id: TCONS_00038337


Basic Information

Item Value
RNA id TCONS_00038337
length 860
RNA type nonsense_mediated_decay
GC content 0.50
exon number 9
gene id XLOC_019441
representative False

Chromosome Information

Item Value
chromosome id NC_007132.7
NCBI id CM002905.2
chromosome length 45934066
location 13611178 ~ 13672195 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TTCATGGGGCGAAAAAAGAAGCTCCCAAAGTTTGCGAAGGAGTGAGATGTGTGTGGAAATGGCAAGAAAGTGACCCGGCCGGCAGCTGTGCCACAAACCAATGCTTTAAAACGGAATTATTCAGCACCAGTCTTCAATTTCGCTGTCTTAAATATGGGAGAAGAGGATGAAGGTCTTTGCCTGTATCCTGCTATTGGGAGTGACATTCGTTCTCGCCTGCAGCAGTTTGTGGAGGAGAGAATGCAGACTACTATGCTGACTGGTGTATTGATCGGGGCTGCGGTGGCTGTGTGTCTAATAGGAATTACCGTGCTGCTCCTCTACCGCAGATATAAACATGCGAgtcAGGAGGCTGGGGTTCCTCGCTATCGCTTCAGAAAAAGAGATAAAGTGCTCTTTTACGGCAGGAAAATCATGAGAAAGGTCCAGACCTTGTCCTCCACACCAACCTCCACTTTGGTGTCTAAGCAGCGCTCTCGGAAAAGACCTAAAGTTCTAAGTATAGCTCGCAGGATCTTGCGTATCAGAAAGGAGCCGCCTACTTTGCAGCCTAAGGAACCCCCTCCCTCTCTCCTGGAGGCAGATCTCACTGAGTTTGATGTGCAGAACTCAAACCTGCCCTCAGAAGTGCTGTACATGCTCAAGAACGTCAGgATGGCACAGAGCTTGTGGTGAAGGACGTGCTGCCTGGCGACAGCGTTCACAGTCTACTCAGCATCCTAGATATCATTACGGGTTATCCAGCTCCTTATAAGACCGTGTCTGCTCGTGCGGCAGTCAGGTCTACAATATTGCGTCTGCCTGCCTCAGCTTTCCAGTCAGTGTTTGAGAAATACCCAGAGACGTTAGTGAGGGTCATA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-070112-1812 Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human PNPLA7 (patatin like phospholipase domain containing 7).

Ensembl:

ensembl_id ENSDART00000142983

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00039595 lncRNA downstream 364057 13284400 ~ 13287769 (-) True XLOC_019439
TCONS_00039594 lncRNA downstream 364079 13284400 ~ 13287747 (-) False XLOC_019439
TCONS_00038325 lncRNA downstream 528702 13098938 ~ 13123124 (-) True XLOC_019436
TCONS_00038320 lncRNA downstream 590052 13055886 ~ 13061774 (-) False XLOC_019434
TCONS_00038356 lncRNA upstream 983053 14645247 ~ 14662602 (-) False XLOC_019452
TCONS_00038357 lncRNA upstream 994399 14656593 ~ 14657777 (-) True XLOC_019452
TCONS_00039235 lncRNA upstream 1101999 14764193 ~ 14765948 (-) True XLOC_019454
TCONS_00039236 lncRNA upstream 1103886 14766080 ~ 14766556 (-) True XLOC_019455
TCONS_00039596 lncRNA upstream 1122758 14784952 ~ 14794572 (-) False XLOC_019457
TCONS_00038332 mRNA downstream 116225 13455308 ~ 13535601 (-) True XLOC_019440
TCONS_00038331 mRNA downstream 158218 13455308 ~ 13493608 (-) False XLOC_019440
TCONS_00038329 mRNA downstream 420725 13224239 ~ 13231101 (-) False XLOC_019438
TCONS_00038330 mRNA downstream 420901 13227044 ~ 13230925 (-) True XLOC_019438
TCONS_00038327 mRNA downstream 426424 13217896 ~ 13225402 (-) False XLOC_019438
TCONS_00038339 mRNA upstream 1462 13663656 ~ 13672195 (-) True XLOC_019441
TCONS_00038340 mRNA upstream 23659 13685853 ~ 13690712 (-) True XLOC_019442
TCONS_00038341 mRNA upstream 40372 13702566 ~ 13751535 (-) True XLOC_019443
TCONS_00038342 mRNA upstream 100215 13762409 ~ 13784859 (-) True XLOC_019444
TCONS_00038343 mRNA upstream 137254 13799448 ~ 13856689 (-) True XLOC_019445
TCONS_00038328 other downstream 426424 13217908 ~ 13225402 (-) False XLOC_019438
TCONS_00038324 other downstream 528722 13095291 ~ 13123104 (-) False XLOC_019436
TCONS_00038313 other downstream 1139104 12512607 ~ 12512722 (-) True XLOC_019429
TCONS_00038307 other downstream 1615692 12027968 ~ 12036134 (-) True XLOC_019423
TCONS_00038306 other downstream 1615752 12027968 ~ 12036074 (-) False XLOC_019423
TCONS_00038344 other upstream 206468 13868662 ~ 13868778 (-) True XLOC_019446
TCONS_00038355 other upstream 983053 14645247 ~ 14663232 (-) False XLOC_019452
TCONS_00038394 other upstream 3459167 17121361 ~ 17121477 (-) True XLOC_019481
TCONS_00038404 other upstream 4146653 17808847 ~ 17808962 (-) True XLOC_019491
TCONS_00038411 other upstream 4604125 18266319 ~ 18272269 (-) False XLOC_019496

Expression Profile

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