RNA id: TCONS_00040217


Basic Information

Item Value
RNA id TCONS_00040217
length 1499
RNA type mRNA
GC content 0.42
exon number 9
gene id XLOC_020229
representative False

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10440991 ~ 10514343 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AGAATCGTAAACTCGTATCGTTCTCGTCTTCTGGACTACATTTAGCTTTTTAAAGTTGCTTGAAAAAGATCATGGAGCAGAAATATGAAGAAGACATCCAGAAGCTCCAGCAGGAAATTGAAATGCTGGAGGCTGAACAGGAGGAGACTTTACGGTCCATTTTTGTACAGCATGGAGATCGACTACAGCAAGGAGTaaaatcagCCTGTGAGGAAAGAGGAGGTGGAGGAGCACAGCAACACGCTGTTTCAAAGCTGATCACAGAAGTCAGAGAGCTGGAAAAAGACCTCAGACGCCAGACAGAAATCAACGGGATTACACTTAATGAGTGTTTTGTGAAGACGTTGCACAAAAGTGAAAGGAAACTCGTACAGCAGCTCAGACTTGCTGGTCACTGCGGGTTACTCTTGTTCCAGGTTGAATTTGCAGTGACTGAGATTCAGgagGACAATGTTCTGCACAGGAGAGTTACTGAGCTCAATATTGTTGTGGATGGAGTTGAATTTAAAGATTTCTCTGCGTTTGTATCAAGAGTGGAGGACACAAAAGATCTTCTCTTGTTCTTCAGGACCTTGAGGACATTTTCTGAGAGATGTGAGGATAGGCGTCAAACGTTTCAGCACTTTCAGGAGAAGTACCCAGACGTGGTCAACCTTCCAGAGGGATGCAGATCAGAGATCATGATTATACGAAGTCCTCAACTTCCAGGGATCTCTATGACTTTATTCTGGAAGATCCACGTCTCCAAGGAAGGAGTGGTAAAGCCGTTGCTTGATCTACTGCTGAAAATGCCAGATCAGGctctGGAGTTGGACACCAAAAAAGTGATGGAAAAAGGCTCCGATTATTTTCAGAGCCTCCTGCAGCTTCTCGGGGTGGAGGCATCGATCGAAGGCTTGATAAGAGCCGTGTGTTCGTGACAAGTTGTAAATCACAAGTCAGCACTCATGGGAACTTCATATctaatcattttatttgatataaaCACCTGTACAATCACCCGTTAGGAACTACATCTTGATGCCACCAGTACGCGTTAATCATTTTCACGCACCATATGCCCACACTGTATGGAAATATACATCATTAGACAAGagctagaaaaataaataattttaaatacaaaatgtcAGACAGCAAAATCcactttgtattttctttttttgaagtAGTTAAAACTTTAATATTAGATTTCCATCACAGAAACTGCGAACTTCCTTTCCTTTTCAAAAATCAACGTCCATTCCTATCTACATAGTGATTATTGATCTGTATTTCATTAAGATAAGACAACGCCACCACCTCAGACTCGTAGTATCTCGGTTCGAATGGGGAAAGATGTCgttaaaacaaaaggcaaaaacagCAATGTCTGGTGTGGAGAAACTGCACTTAATCGgatacatcatcatcatcatcataacacATCAAAATGGAGCGACAGGACAGTACGCAATCGGTTGGACGATAAAAGTGCGTTCGCTCATGATTAAGTAAGG

Function

GO:

id name namespace
GO:0034080 CENP-A containing nucleosome assembly biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040801-74 Predicted to act upstream of or within CENP-A containing nucleosome assembly. Predicted to be located in chromosome, centromeric region. Predicted to be active in nucleus. Orthologous to human CENPP (centromere protein P).

Ensembl:

ensembl_id ENSDART00000064805

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042074 lncRNA upstream 86655 10300403 ~ 10354336 (+) False XLOC_020228
TCONS_00042075 lncRNA upstream 86655 10300417 ~ 10354336 (+) False XLOC_020228
TCONS_00040216 lncRNA upstream 139567 10300526 ~ 10301424 (+) True XLOC_020228
TCONS_00040213 lncRNA upstream 218331 10214994 ~ 10222660 (+) False XLOC_020226
TCONS_00042073 lncRNA upstream 218331 10216804 ~ 10222660 (+) True XLOC_020226
TCONS_00040238 lncRNA downstream 568433 11082776 ~ 11085979 (+) True XLOC_020240
TCONS_00042076 lncRNA downstream 576285 11090628 ~ 11098487 (+) False XLOC_020241
TCONS_00040239 lncRNA downstream 583169 11097512 ~ 11098487 (+) True XLOC_020241
TCONS_00040240 lncRNA downstream 588648 11102991 ~ 11104983 (+) False XLOC_020242
TCONS_00041886 lncRNA downstream 588649 11102992 ~ 11104289 (+) False XLOC_020242
TCONS_00040215 mRNA upstream 178550 10232527 ~ 10262441 (+) True XLOC_020227
TCONS_00040214 mRNA upstream 221775 10215558 ~ 10219216 (+) False XLOC_020226
TCONS_00040211 mRNA upstream 228489 10201826 ~ 10212502 (+) False XLOC_020225
TCONS_00040212 mRNA upstream 232445 10201871 ~ 10208546 (+) True XLOC_020225
TCONS_00040210 mRNA upstream 241977 10166407 ~ 10199014 (+) True XLOC_020224
TCONS_00040219 mRNA downstream 28986 10543329 ~ 10559760 (+) False XLOC_020230
TCONS_00040221 mRNA downstream 92230 10606573 ~ 10641287 (+) False XLOC_020231
TCONS_00040222 mRNA downstream 92520 10606863 ~ 10639022 (+) True XLOC_020231
TCONS_00040223 mRNA downstream 130745 10645088 ~ 10658520 (+) False XLOC_020232
TCONS_00040224 mRNA downstream 132585 10646928 ~ 10658513 (+) False XLOC_020232
TCONS_00040207 other upstream 276827 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040182 other upstream 651187 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040167 other upstream 1057507 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 1654698 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 1671598 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040220 other downstream 39385 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 158808 10673151 ~ 10678490 (+) False XLOC_020234
TCONS_00040250 other downstream 1148274 11662617 ~ 11674637 (+) True XLOC_020251
TCONS_00040255 other downstream 1380019 11894362 ~ 11894479 (+) True XLOC_020255
TCONS_00040257 other downstream 1603277 12117620 ~ 12117744 (+) True XLOC_020257

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_07957599_07964510.mRNA True 1033 mRNA 0.41 6 CI01000030 7957323 ~ 7964510 (-)