RNA id: TCONS_00040218


Basic Information

Item Value
RNA id TCONS_00040218
length 718
RNA type processed_transcript
GC content 0.43
exon number 4
gene id XLOC_020229
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 10440991 ~ 10514343 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATTCTGGAAGGCCCTGAGGAATGGTACGGAAATGGTTTCTGTTTAGCCGAAGGTAATTCAACTCTTTGAGGGGTTTGAAGGCCTGCGGATTCACATTACCTTCACTGAGCAAGTTCCCCTCCATTTCCAAAGTAACCAGACTGCTGAGACCTTCCAGGAATTATGAAGCAATTTGTGAAAATATTGTgttttcaaagtacaacattagGAGAAGTACCCAGACGTGGTCAACCTTCCAGAGGGATGCAGATCAGAGATCATGATTATACGAAGTCCTCAACTTCCAGGGATCTCTATGACTTTATTCTGGAAGATCCACGTCTCCAAGGAAGGAGTGGTAAAGCCGTTGCTTGATCTACTGCTGAAAATGCCAGATCAGGctctGGAGTTGGACACCAAAAAAGTGATGGAAAAAGGCTCCGATTATTTTCAGAGCCTCCTGCAGCTTCTCGGGGTGGAGGCATCGATCGAAGGCTTGATAAGAGCCGTGTGTTCGTGACAAGTTGTAAATCACAAGTCAGCACTCATGGGAACTTCATATctaatcattttatttgatataaaCACCTGTACAATCACCCGTTAGGAACTACATCTTGATGCCACCAGTACGCGTTAATCATTTTCACGCACCATATGCCCACACTGTATGGAAATATACATCATTAGACAAGagctagaaaaataaataattttaaatacaaaatgtcAGACAGC

Function

GO:

id name namespace
GO:0034080 CENP-A containing nucleosome assembly biological_process
GO:0000775 chromosome, centromeric region cellular_component
GO:0005634 nucleus cellular_component
GO:0005694 chromosome cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040801-74 Predicted to act upstream of or within CENP-A containing nucleosome assembly. Predicted to be located in chromosome, centromeric region. Predicted to be active in nucleus. Orthologous to human CENPP (centromere protein P).

Ensembl:

ensembl_id ENSDART00000148489

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00042074 lncRNA upstream 139919 10300403 ~ 10354336 (+) False XLOC_020228
TCONS_00042075 lncRNA upstream 139919 10300417 ~ 10354336 (+) False XLOC_020228
TCONS_00040216 lncRNA upstream 192831 10300526 ~ 10301424 (+) True XLOC_020228
TCONS_00040213 lncRNA upstream 271595 10214994 ~ 10222660 (+) False XLOC_020226
TCONS_00042073 lncRNA upstream 271595 10216804 ~ 10222660 (+) True XLOC_020226
TCONS_00040238 lncRNA downstream 568794 11082776 ~ 11085979 (+) True XLOC_020240
TCONS_00042076 lncRNA downstream 576646 11090628 ~ 11098487 (+) False XLOC_020241
TCONS_00040239 lncRNA downstream 583530 11097512 ~ 11098487 (+) True XLOC_020241
TCONS_00040240 lncRNA downstream 589009 11102991 ~ 11104983 (+) False XLOC_020242
TCONS_00041886 lncRNA downstream 589010 11102992 ~ 11104289 (+) False XLOC_020242
TCONS_00040215 mRNA upstream 231814 10232527 ~ 10262441 (+) True XLOC_020227
TCONS_00040214 mRNA upstream 275039 10215558 ~ 10219216 (+) False XLOC_020226
TCONS_00040211 mRNA upstream 281753 10201826 ~ 10212502 (+) False XLOC_020225
TCONS_00040212 mRNA upstream 285709 10201871 ~ 10208546 (+) True XLOC_020225
TCONS_00040210 mRNA upstream 295241 10166407 ~ 10199014 (+) True XLOC_020224
TCONS_00040219 mRNA downstream 29347 10543329 ~ 10559760 (+) False XLOC_020230
TCONS_00040221 mRNA downstream 92591 10606573 ~ 10641287 (+) False XLOC_020231
TCONS_00040222 mRNA downstream 92881 10606863 ~ 10639022 (+) True XLOC_020231
TCONS_00040223 mRNA downstream 131106 10645088 ~ 10658520 (+) False XLOC_020232
TCONS_00040224 mRNA downstream 132946 10646928 ~ 10658513 (+) False XLOC_020232
TCONS_00040207 other upstream 330091 10159158 ~ 10164164 (+) False XLOC_020223
TCONS_00040182 other upstream 704451 9787067 ~ 9789804 (+) True XLOC_020205
TCONS_00040167 other upstream 1110771 9359899 ~ 9383484 (+) True XLOC_020197
TCONS_00040142 other upstream 1707962 8786167 ~ 8786293 (+) False XLOC_020180
TCONS_00040140 other upstream 1724862 8766367 ~ 8769393 (+) True XLOC_020179
TCONS_00040220 other downstream 39746 10553728 ~ 10558972 (+) True XLOC_020230
TCONS_00040228 other downstream 159169 10673151 ~ 10678490 (+) False XLOC_020234
TCONS_00040250 other downstream 1148635 11662617 ~ 11674637 (+) True XLOC_020251
TCONS_00040255 other downstream 1380380 11894362 ~ 11894479 (+) True XLOC_020255
TCONS_00040257 other downstream 1603638 12117620 ~ 12117744 (+) True XLOC_020257

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000030_07915089_07922551.mRNA True 709 mRNA 0.44 4 CI01000030 7915019 ~ 7922704 (-)