RNA id: TCONS_00040522


Basic Information

Item Value
RNA id TCONS_00040522
length 267
RNA type processed_transcript
GC content 0.51
exon number 3
gene id XLOC_020427
representative True

Chromosome Information

Item Value
chromosome id NC_007133.7
NCBI id CM002906.2
chromosome length 39133080
location 22478264 ~ 22629319 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCAACAGATTCAAGGAAAGAAGAAAAGCTCTAAATTTTTCCAACTGCACCAGCTCCAGGCCCTCCAGTTCAGTGGGCAGCTCTCGTCCAGGCAGTTCTCCTGTCCCAGCAGTTTCCGACAGGCAAACGATCACCACCAGTCACTCCAGCGGCTCCTTAACCCACAGCGACAACAACATCCCTCAGAGTTTTCACAAAACAAGGCATCTGTCTCTCCTCTGTGTCAATGACagcctgaatgaagacctgcgaTGTCCTGACACTGGTG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

Ensembl:

ensembl_id ENSDART00000148223

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00040512 lncRNA upstream 555230 22004114 ~ 22010944 (+) False XLOC_020421
TCONS_00041899 lncRNA upstream 663060 21900680 ~ 21903114 (+) True XLOC_020417
TCONS_00041898 lncRNA upstream 665156 21900318 ~ 21901018 (+) False XLOC_020417
TCONS_00042141 lncRNA upstream 714043 21848286 ~ 21852131 (+) True XLOC_020416
TCONS_00041897 lncRNA upstream 742947 21822959 ~ 21823227 (+) True XLOC_020415
TCONS_00040523 lncRNA downstream 132503 22721222 ~ 22723937 (+) True XLOC_020428
TCONS_00042143 lncRNA downstream 639991 23228710 ~ 23263045 (+) False XLOC_020432
TCONS_00042144 lncRNA downstream 664929 23253648 ~ 23263045 (+) True XLOC_020432
TCONS_00041901 lncRNA downstream 795479 23384198 ~ 23384456 (+) True XLOC_020434
TCONS_00042145 lncRNA downstream 895718 23484437 ~ 23489879 (+) True XLOC_020435
TCONS_00040520 mRNA upstream 89166 22437561 ~ 22477008 (+) False XLOC_020426
TCONS_00040521 mRNA upstream 90014 22438783 ~ 22476160 (+) True XLOC_020426
TCONS_00040518 mRNA upstream 135983 22417751 ~ 22430191 (+) False XLOC_020425
TCONS_00040519 mRNA upstream 137615 22420234 ~ 22428559 (+) True XLOC_020425
TCONS_00040517 mRNA upstream 250851 22303053 ~ 22315323 (+) True XLOC_020424
TCONS_00040527 mRNA downstream 770650 23359369 ~ 23430865 (+) False XLOC_020433
TCONS_00040528 mRNA downstream 841969 23430688 ~ 23479989 (+) True XLOC_020433
TCONS_00040530 mRNA downstream 958207 23546926 ~ 23582605 (+) True XLOC_020437
TCONS_00040531 mRNA downstream 1569088 24157807 ~ 24169089 (+) True XLOC_020438
TCONS_00040532 mRNA downstream 1625946 24214665 ~ 24218858 (+) False XLOC_020440
TCONS_00040488 other upstream 1472209 21093851 ~ 21093965 (+) True XLOC_020402
TCONS_00040475 other upstream 2414193 20151925 ~ 20151981 (+) True XLOC_020387
TCONS_00040472 other upstream 2426582 20139525 ~ 20139592 (+) True XLOC_020385
TCONS_00040470 other upstream 2772941 19793119 ~ 19793233 (+) True XLOC_020381
TCONS_00040469 other upstream 2794362 19771698 ~ 19771812 (+) True XLOC_020380
TCONS_00040524 other downstream 251839 22840558 ~ 22840675 (+) True XLOC_020429
TCONS_00040525 other downstream 367013 22955732 ~ 22955849 (+) True XLOC_020430
TCONS_00040526 other downstream 506969 23095688 ~ 23095804 (+) True XLOC_020431
TCONS_00040529 other downstream 903607 23492326 ~ 23493332 (+) True XLOC_020436
TCONS_00040541 other downstream 1902908 24491627 ~ 24500269 (+) True XLOC_020445

Expression Profile

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