RNA id: TU1242566


Basic Information

Item Value
RNA id TU1242566
length 1085
RNA type TUCP
GC content 0.47
exon number 2
gene id G1092523
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 57291444 ~ 57357274 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TATTAGGATTTGTCTTTATTCACCGTTATACGTGGGTACAGCTTTCCAAATGCAACTACAGTACAGACCAGTGTTTTAGACCATATCTTAACAACAGTGAGTGGCCAGTAACAGTCAGAGGATGGTGAAATCATAGAAAAAGAATGAATTGAATTTCTATGGGTGTAATAGTCAGAGGCCCATGTGCTGGCCCATTGGTTCtttggtgttctgtgtgtatcaCCAGCCTGGTCCAGATCAGTTTGTGCAGTCTttccaactcctatggtcattgtcaacAAAATGATCGGGGACTAGGCTACAGTATCACTGGTATCCTGGCTCTTCTTGGCTGTGTTAACGTCTgtaagcagagagggagagagagagagagagcgagcgagagagagagagagagagagagagcaagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaggcagcaagcACAGAATGATGATGCAACAGCAGGACTGCAGTCACTGCTTGCAGATCTAATCATTTTCAGTTCCTAGCAAGCGCATAGTAGGAatgaggagagtgtgtgtgtatgtgtgtgtgtgtgtgtgtaactgttttTTGTTATGGCTTGACTCAAATGCAGATAGTAATTACTGCAGTGTGGGATAGAGCAGGCAAGTGGTGTTAGTGTGAGCACACGTGAAACGTATAACGTTATAGATGCATTTCCAGAGCCTACTGTAACTATACAATAGGTGTGGAATTATCACAGTTTGGcctaccttctctctttctgtctaacCATTTCATCTGTGTctactatgtgtgtgtgcgtgtgagtgtgtgtttatgtttatgtttggagtttcactcttcttcttcctcctcttcatgaTGCTCATCATGATGGTGCCCATTGCCACTTCCCTTCCTCGTTGTCATGTCGTAGGGCTTGGTCTTGCTGCTGCCCATGGCGACAGGGATGGAGATCTCTGCAGCCTTGATGGCCTGCCTGTTCAGAGGAGTCTCCACGGTCAGCACTCCCTCGGGAGATAAGGTGGACGTCACCTTCTCAGCGTCAGCCATAGGGGGCAGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1242454 lncRNA downstream 211181 57144750 ~ 57144983 (-) True G1092425
TU1242450 lncRNA downstream 214893 57140972 ~ 57141271 (-) True G1092421
TU1242449 lncRNA downstream 215384 57140558 ~ 57140780 (-) True G1092420
TU1242447 lncRNA downstream 219439 57136521 ~ 57136725 (-) True G1092418
TU1242446 lncRNA downstream 219765 57135718 ~ 57136399 (-) True G1092417
TU1242618 lncRNA upstream 30760 57388034 ~ 57388300 (-) True G1092572
TU1242682 lncRNA upstream 117281 57474555 ~ 57493672 (-) True G1092631
TU1242798 lncRNA upstream 263762 57621036 ~ 57622626 (-) True G1092743
TU1242812 lncRNA upstream 283100 57640374 ~ 57640637 (-) True G1092757
TU1242814 lncRNA upstream 284296 57641570 ~ 57641838 (-) True G1092759
XR_005035033.1 mRNA downstream 81174 57258779 ~ 57274990 (-) True LOC118937684
XM_036937859.1 mRNA downstream 266648 57036871 ~ 57089516 (-) True LOC110537827
XM_021624244.2 mRNA downstream 266650 57036871 ~ 57089514 (-) False LOC110537827
XR_005035031.1 mRNA downstream 266651 57036871 ~ 57089513 (-) False LOC110537827
XM_021624246.2 mRNA downstream 266652 57036871 ~ 57089512 (-) False LOC110537827
NM_001124474.1 mRNA upstream 9109 57366383 ~ 57379112 (-) True LOC100136198
XM_036937862.1 mRNA upstream 32339 57389613 ~ 57404991 (-) True LOC110537836
LOC110538911 mRNA upstream 282855 57640129 ~ 57645946 (-) True LOC110538911
XM_021624271.2 mRNA upstream 842114 58199388 ~ 58217969 (-) True LOC110537845
XM_021624274.2 mRNA upstream 931689 58288963 ~ 58290670 (-) False LOC110537849
TU1242225 other downstream 497017 56857338 ~ 56859147 (-) False G1092205
TU1242226 other downstream 497354 56857338 ~ 56858810 (-) True G1092205
TU1240672 other downstream 1063547 56283754 ~ 56292617 (-) True LOC110537819
TU1240382 other downstream 1293457 56062430 ~ 56062707 (-) True G1090502
TU1236740 other downstream 4223289 53131805 ~ 53132875 (-) True G1087093
TU1244741 other upstream 1821212 59178486 ~ 59187555 (-) True pitpnbl
TU1244971 other upstream 2151324 59508598 ~ 59539380 (-) False G1094699
TU1245059 other upstream 2343194 59700468 ~ 59702147 (-) True G1094783
TU1245206 other upstream 2610994 59968268 ~ 59971507 (-) True natd1
TU1247860 other upstream 2981600 60338874 ~ 60349353 (-) False snrnp70

Expression Profile