RNA id: TU1245059


Basic Information

Item Value
RNA id TU1245059
length 1507
RNA type TUCP
GC content 0.42
exon number 2
gene id G1094783
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59700468 ~ 59702147 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

GATTTAATTGGATATTAGACAGACGAGGCCCGCCAGTGAGCAACTGCAACCACATGGCTGGGGTTTACTCATTACATCTTGCAATGGAAACAATTTACGAATCAAACGGGGGACCTACCTGAATCTGTCCAATAGAATCTGTCTAGTTTTCATTTGGAATATTGATTACACCCCAGTACTACAGGTCAACAGTACAAATGAGAATGATGTCTTAGAGTTAACAGACACACACTTTTACATGCCAGCCACCATAAAGAGTTAACTCCCACTCCAACATCTGCACATCAGAGACAGTCTCCACTGGACACATGCATCCAGAGGAATTCAAAGCCCTTAGAACAATTACCCACAGTGCAATTAATCTAGCTATACAGATATTTattagatagagatatatatacacacgcacacacctctcCATCTCATTGGGAACTCGATAAAACAGTTTTATTAACATTTCAAAATCTTCATAAATAATTAGTGAAAAAAACAACCAAACCAAAAAAAAGAGTTATCCATGTCCTCGTATTAGTTAGGTCCTTTAATGTGAAAATGGTCCCCAGAAAAATAAAATTATTTGTCCAACAGTCCGTTCTTCGGACatttaaagaaaaaaacaaacaaaaggaacaataataataaaagccatttagcagacacataAATGAGAGGAAATTGGGAGGAAGGAGGTAAACCAATACTCAAGCACACACAGGACGAAAGCGTCACTACATTTACAAAGCGCATTTATAAGGGTTTGGCTAGTTGACGACTGTACAGGAAAAGACTGGAATAGGAGACGCTTTTCACTTCACGCCCAATCTCAAATCACGCCGTGTCCCAAATCTTGAGTTTGACCAGAGCACAATATAACTCTGGTCaatagtgcactatttagagaagaatatggtgccatttgggacacagcccttaACACCTCAAGATGCCTCCCTCGTAGATCTGACAGGCATGAATGTAGGAGTGGCTttaccattttatttttttatatatttttttaacctttatttaaccaggcaaACCAAGAGATGGCTAACACTCATTCAAACCTATTAGATCTACAAAGGACTCGGTAGTGTCACTAGGAAAGAAGTGGCTAAAGGGAGTCGATTTGGAACCAGGCGTAAAGGCATGCTCTCCAATTTGTTCTTTATTTCTTAGACGTTTATATATGGAATGGATGACGTAGCGTTGACTCGACGTACACAGACGGACAGATGGACTTTGCTCTCTCTATTTTGTGGAGAGGATGAGAGCCACAATAAGACCGTAGAGCCCCAGGACCTCTGCAAAGATCAGGATGAGGATCATGCCCACGAAGAGCCTGGGCTGCTGGGCCGTGCCCCGAACACCTGCATCGCCCACAATGCCGATGGCGAAACCAGCCGCCAGCCCACTCAGCCCCACACTCAGCCCAGCACCCAGGTGGAGGAAACTCCTacaggagagaggtgagggatagagaaagatggagagagggtagaaAAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1245076 lncRNA downstream 13037 59687205 ~ 59687431 (-) True G1094798
TU1245075 lncRNA downstream 13331 59686899 ~ 59687137 (-) True G1094797
TU1245002 lncRNA downstream 109360 59579325 ~ 59591108 (-) True G1094726
TU1244991 lncRNA downstream 134137 59565359 ~ 59566331 (-) True G1094717
TU1244990 lncRNA downstream 135444 59564378 ~ 59565024 (-) True G1094716
TU1245078 lncRNA upstream 469 59702616 ~ 59702893 (-) True G1094800
TU1245080 lncRNA upstream 2665 59704812 ~ 59705861 (-) True G1094802
TU1245081 lncRNA upstream 6109 59708256 ~ 59710221 (-) True LOC118937689
TU1245082 lncRNA upstream 22801 59724948 ~ 59726544 (-) True G1094804
TU1245114 lncRNA upstream 36075 59738222 ~ 59738638 (-) True G1094819
XM_021624330.2 mRNA downstream 104281 59586461 ~ 59596187 (-) True amdhd2
XM_036939516.1 mRNA downstream 125905 59571144 ~ 59574563 (-) True LOC118936462
XR_005035050.1 mRNA downstream 131157 59567856 ~ 59569311 (-) True LOC110537880
XM_021624315.2 mRNA downstream 419891 59214586 ~ 59280577 (-) True asphd1
XM_021624308.2 mRNA downstream 512719 59144152 ~ 59187749 (-) False pitpnbl
XR_005035049.1 mRNA upstream 6078 59708225 ~ 59710379 (-) False LOC118937689
XM_036937916.1 mRNA upstream 67585 59769732 ~ 59838516 (-) False mapk8ip3
XM_036937917.1 mRNA upstream 67585 59769732 ~ 59838516 (-) False mapk8ip3
XM_036937918.1 mRNA upstream 67585 59769732 ~ 59838516 (-) False mapk8ip3
XM_036937919.1 mRNA upstream 67585 59769732 ~ 59838516 (-) False mapk8ip3
TU1244971 other downstream 161088 59508598 ~ 59539380 (-) False G1094699
TU1244741 other downstream 512913 59178486 ~ 59187555 (-) True pitpnbl
TU1242566 other downstream 2343194 57356164 ~ 57357274 (-) True G1092523
TU1242225 other downstream 2841321 56857338 ~ 56859147 (-) False G1092205
TU1242226 other downstream 2841658 56857338 ~ 56858810 (-) True G1092205
TU1245206 other upstream 266121 59968268 ~ 59971507 (-) True natd1
TU1247860 other upstream 636727 60338874 ~ 60349353 (-) False snrnp70
TU1247861 other upstream 636727 60338874 ~ 60349353 (-) True snrnp70
TU1248340 other upstream 1336569 61038716 ~ 61324712 (-) False G1097645
TU1248372 other upstream 1441965 61144112 ~ 61244327 (-) True LOC110539101

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU207439 False 1598 lncRNA 0.40 2 NC_053126.1 8718193 ~ 8719900 (-)