RNA id: TU1245002


Basic Information

Item Value
RNA id TU1245002
length 1371
lncRNA type sense_over
GC content 0.40
exon number 2
gene id G1094726
representative True

Chromosome Information

Item Value
chromosome id NC_048576.1
NCBI id CM023230.2
chromosome length 102853256
location 59579325 ~ 59591108 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

caccttagccaaatacatttaaactcagttgtttttacaatccctgacatttaatcctagtaaaaattccctgtcttaggtcagttaggatcaccacttcattttaagaatgtgaaatgtcagaataatagtagagtgaatgattaatttcacactttttcagttctgcccacaaattgtctataggtttgaggtcatggctttttgatggccactccaatactttgactttgttgtccttaagccattttgccacaactttggaagtatgcttggggtcatgtgtccatttggaagactcatttgcgaccaagctttaacttcctgactgatgtcttgagatgttgcttcaatatagccacataattttccatcctcatgatgccatctattttgtgaagtgcaccagtccctcctgcagtaaagcacccccacaacatgatgctgccaccccgtgcttcatggttgggatggtgttctttggcttgcaagcctccccttttcctccaaacataacgatggtcattatgaccaaacagttctatttttgtttcatcagaccagagaacatttctgcaaaatgtacgatctttgtccccatgtgcagttgcaaaccgtagtctggctttttttatggcggttttggagcagtggcttcttccttgctgagtggcctttcaggttatgtcgatatggggctcattttactgtggatatagatacttttgtacctgtttcctccagcatcttcacaaggtccttcgctgttgttctgggattgatttgcacttttcgcaccaaagtacgttcatcactTGGAGATAGAACGCggcagcgtggtcccatggtgtttatacttcatactattgtttgtacagatgaacgtggtgttcaggtgtttggaaattgctcccaaggatgaaccagacttgtggaggtctacaattgtttttctgaggtcttggctttgcttttgcttttcccatgatgtcaagcaacgaggcactgagtttgaaggtaggccttgaaatacatccacaggtacacctccaattgactcaaattatgtcaattagcctgtcagaaacttctaaagccatgacataattttctggaattttccaaactgtttaaaggtacagtcaacatagtgtatgtaaacttctgacccactggaattgtgatacagtgaaataatctgtctgtaaacaattgttggaaaaattacttgagtcatgcacaaagtagatgtcctaaccgacttgccaaaactatagtttgttaacaagacatttgtagagtggttgaaaaacgaattttaaggactccaacctaagtgtatctaaactttcaacttcaactgtatatcaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1244991 lncRNA downstream 12994 59565359 ~ 59566331 (-) True G1094717
TU1244990 lncRNA downstream 14301 59564378 ~ 59565024 (-) True G1094716
TU1244978 lncRNA downstream 35683 59543438 ~ 59543642 (-) True G1094704
TU1244972 lncRNA downstream 40986 59522876 ~ 59538339 (-) True G1094699
TU1244973 lncRNA downstream 59983 59508598 ~ 59519342 (-) False G1094699
TU1245075 lncRNA upstream 95791 59686899 ~ 59687137 (-) True G1094797
TU1245076 lncRNA upstream 96097 59687205 ~ 59687431 (-) True G1094798
TU1245078 lncRNA upstream 111508 59702616 ~ 59702893 (-) True G1094800
TU1245080 lncRNA upstream 113704 59704812 ~ 59705861 (-) True G1094802
TU1245081 lncRNA upstream 117148 59708256 ~ 59710221 (-) True LOC118937689
XM_036939516.1 mRNA downstream 4762 59571144 ~ 59574563 (-) True LOC118936462
XR_005035050.1 mRNA downstream 10014 59567856 ~ 59569311 (-) True LOC110537880
XM_021624315.2 mRNA downstream 298748 59214586 ~ 59280577 (-) True asphd1
XM_021624308.2 mRNA downstream 391576 59144152 ~ 59187749 (-) False pitpnbl
XM_021624298.2 mRNA downstream 745693 58825792 ~ 58833632 (-) False LOC110537866
XR_005035049.1 mRNA upstream 117117 59708225 ~ 59710379 (-) False LOC118937689
XM_036937916.1 mRNA upstream 178624 59769732 ~ 59838516 (-) False mapk8ip3
XM_036937917.1 mRNA upstream 178624 59769732 ~ 59838516 (-) False mapk8ip3
XM_036937918.1 mRNA upstream 178624 59769732 ~ 59838516 (-) False mapk8ip3
XM_036937919.1 mRNA upstream 178624 59769732 ~ 59838516 (-) False mapk8ip3
TU1244971 other downstream 39945 59508598 ~ 59539380 (-) False G1094699
TU1244741 other downstream 391770 59178486 ~ 59187555 (-) True pitpnbl
TU1242566 other downstream 2222051 57356164 ~ 57357274 (-) True G1092523
TU1242225 other downstream 2720178 56857338 ~ 56859147 (-) False G1092205
TU1245059 other upstream 109360 59700468 ~ 59702147 (-) True G1094783
TU1245206 other upstream 377160 59968268 ~ 59971507 (-) True natd1
TU1247860 other upstream 747766 60338874 ~ 60349353 (-) False snrnp70
TU1247861 other upstream 747766 60338874 ~ 60349353 (-) True snrnp70
TU1248340 other upstream 1447608 61038716 ~ 61324712 (-) False G1097645

Expression Profile