RNA id: TU207439


Basic Information

Item Value
RNA id TU207439
length 1598
lncRNA type inter_gene
GC content 0.40
exon number 2
gene id G153137
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8700109 ~ 8776266 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctCTTTATGCACTCATACACCACAAAACAATTAATTAAGCATGTCTTTTTTAATTTCAACTTTTGAATGCAGCATGAGGGATTTAACTGAAGATAAAGCAAGCAATTCTCTTCAATATTATGTGTGGCATATCAACATATGctgtaattaaaaatattaatgagGCAACTCTCATCCACCTCAGGATGTATTGTAATAACTATTGCGATTCTCTCATTTCTTTCATCTAGCTGTAAATTTAATACCCAAGTTTCACTTTCACCAAGTGCTTGAAGCTGTCTAAATGTCGTTGGTATGGTTAGTTTAGTCATCCCATTAATAtcagacaaaaataaataaaaaataagggtCAAGAATTATGTTCTGGAGGAGGTTGAGTTTTATTTGGAAATCTGACAGGCATGGCTGAACAGTGAGctcttaaacaaaacaaaaaaatcaagacCGCAGTACTACAGGTAAACGATACTAGTGTTTCAGAATGTCATATTAAACATAAAGACTTGCACACACATTATTCACTCaggtcattcacacacacacacacacacacacacacacacacacacacacacacacacaTCCTCCACTAATAATCACACTACATCCAGAGGAATTCCAAGCACTTAGAACAATTACCCACAGTGCAATTAATCTAACTATACACagataatttatatatatttttttatgtatataggGTATTCAATAAACAGTGTTCCATTTAGACAGTTTCATTAAGTCAAAATCTTCATAACTTTCCataaatagtgacaaaaaaaaaatgtattaacagCTCCTCACCACTGTGATTAAAAAATGGTCcccgaaaaaaaaacatgataaaatTAAATACTAGTGTGCATGAATCTTCAGCAGTCTCGAAATGGAGAATGACAATCAAACCcaacaacagaaaatgaaaaccAAAGGAGGGGAATGGGCAGCGGGATAAACGTTGATACTCACACTCACAGCACAGACTGGTTACTACATTTACAGGGGACGGACTCTGGATCACTGTACAGGTTAAgatcagacaaaaaaaataaatcaagcaGACTGTCCACACATCATCCCACAACAACCAATACATTTTCATGCCCGTTCAGTACTCACAAGACCTGACACAACTGGATGGCTTTAAACAATATGGATAGATCACATCTACTGAGGACACCGCTGTCACGCCAACTTGTTTCTGTTGCCATCCCATCCTGTCAGACTCACGGGGTGTAATGGAAAGTAGGTGAAAATCTCCTATTTGTTCTTGCTGCTTTGACGTGGAATGAATGAGATGGTGTTTGATTCGGACACTTATTATTTTGTAGATAGGATGAGGGCCACGATGAGGCCGTAAAGCCCCAGCACCTCGGCGAAGATCAGGATCAGGATCATGCCCACGAAAAGCCGGGGCTGCTGGGCGGTGCCTCTCACACCGGCGTCGCCCACAATGCCAATGGCGAACCCGGCCGCCAGACCGCTCAGGCCCACGCTCAGACCAGCACCGAGATGCAGGAAACTCCTGTCGGGAGAGAAACCAAGAAAAGAGCACCGTCACTGCACAAGTCCGAAACattgaataataaaatatagg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207433 lncRNA downstream 16405 8700109 ~ 8701788 (-) False G153137
TU207443 lncRNA downstream 33440 8659611 ~ 8684753 (-) False G153139
TU207442 lncRNA downstream 33440 8680647 ~ 8684753 (-) True G153139
TU207444 lncRNA downstream 33440 8680647 ~ 8684753 (-) False G153139
TU207448 lncRNA downstream 70902 8647083 ~ 8647291 (-) True G153143
TU207562 lncRNA upstream 175886 8895786 ~ 8898629 (-) False zgc:55558
TU207565 lncRNA upstream 175886 8895786 ~ 8903823 (-) False zgc:55558
TU207566 lncRNA upstream 175886 8895786 ~ 8903823 (-) False zgc:55558
TU207568 lncRNA upstream 175886 8895786 ~ 8903823 (-) False zgc:55558
TU207647 lncRNA upstream 341396 9061296 ~ 9111224 (-) True G153274
XM_039825208.1 mRNA downstream 52539 8660302 ~ 8665654 (-) True nudt9
XM_039825844.1 mRNA downstream 58974 8651632 ~ 8659219 (-) True si:ch211-11k18.4
XM_039824671.1 mRNA downstream 77758 8627083 ~ 8640435 (-) False rabep2
XM_039824670.1 mRNA downstream 77760 8627083 ~ 8640433 (-) True rabep2
XM_039823764.1 mRNA downstream 197608 8513629 ~ 8520585 (-) False LOC120573875
XM_039824521.1 mRNA upstream 19731 8739631 ~ 8768700 (-) True mapk8ip3
XM_039824533.1 mRNA upstream 19731 8739631 ~ 8768698 (-) False mapk8ip3
XM_039824541.1 mRNA upstream 19731 8739631 ~ 8768698 (-) False mapk8ip3
XM_039824540.1 mRNA upstream 19731 8739631 ~ 8768698 (-) False mapk8ip3
XM_039824525.1 mRNA upstream 19731 8739631 ~ 8768698 (-) False mapk8ip3
TU207167 other downstream 273812 8441179 ~ 8444381 (-) True G152952
XR_005641918.1 other downstream 617795 8082138 ~ 8100398 (-) False LOC120574885
TU206683 other downstream 1997550 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 2490079 6182408 ~ 6228114 (-) True G152441
TU206278 other downstream 3104525 5610556 ~ 5613668 (-) False atp5mf
TU207482 other upstream 11497 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 92442 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 133860 8853760 ~ 8856957 (-) True tufm
TU207546 other upstream 133860 8853760 ~ 8857571 (-) False tufm
TU207547 other upstream 133860 8853760 ~ 8856957 (-) False tufm

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1245059 True 1507 TUCP 0.42 2 NC_048576.1 59700468 ~ 59702147 (-)