RNA id: TU207525


Basic Information

Item Value
RNA id TU207525
length 2536
RNA type TUCP
GC content 0.42
exon number 3
gene id natd1
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8812330 ~ 8816305 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TGCTGCTTTGACCGttcatcatttattttcatgtaGCCATTTCTGGTTAGCAACGCTGAAGAGTAGCATAGCAGTCATCGTCAACTGTAGCAAGCTACTATggcacaggcagcaccggcgaaTGTCTTCGACGCAAACAACTCTCAGATCCAGGTGGAACACGATAAAAAGCGTCGGCAGTTTGTTATAAGACTAAATGGATCTCATGATCGTGCAGTTCTGCTGTATGAATATGTTGGGAAGAAGACAGTGGACTTGCAACACACTGAAGTTCCAGATGCTTACAGAGGTAGAGGAATTGCCAAGCACCTGGCCAAGGCAGCCATGGATTTTGTGGTGGAAGAGGATCTGAAAGCCCACTTGACCTGCTGGTACATTCAGAAATATGTCAAAGAGAATCCTCAGCCTCAATACTTTGAACATATTTATCAATGACCCTACATGACTCTGACAGAGAAGAGTAGGAGAAAGAGACTCCCAGGGGATAAATGCTGTGTGGCATCATGCTTTGGAGTTACAGGCTGACATACAACAAATGACCTTCCAGGCATGTCCCTCCAGAGACAACTGATCTCACGGCAAAGACGTCCATGAGCTGAACGTTGGGTCTACGGGTCCGTAACATGGGGATACACACTCGCCAGAAACAGGAAGTGCATCTGCTGGTCACTACCTGTAAAAACATGAGCAAATAAACTAACCAAAGCTGAAGCCTGTTACCTCATACAGAAACCTTCAGGATCCACCCATTATGGACTGGAAACAAGGGTTAGGCTGCATTCACATCAAATCGGGCGTTTCGGTGAAAACGCCAGTCCTCCCATTCATGTGAATGTGGCTAGTGCGATTAGGCTGCAGAGGATGCCGGGGGGGGGGAAAACACAGCAGCTTACAGCGAAAAGTTGAAACAGAAtaaacttttggagaaacgcaacccaaCGACACACTGCCAATAACTGTGAGTGTTTCATACTGGCAATCGAATCTAAACACAATGGAGTGGGGAACACAATGGAGACACAAATGGGTCCTTTAAGTGACACTCCCATACCGTCGCACAACGCTGCGCTGATCACCACAATGCCTGATTTGGTGGGAATGCAGCCTTAGGCCTGTAATGAGAACAGATGCGAGTCAGATCTTATATGTTGCAAATTTCCTGTCCTTTGGACTCACTGGTTGTGAGCAGAAGGGCTTCACTGATGCTCAAACGTTGATGACTTTTATATTTTGAGCCCCCTTTTAATATTCTTTGGcttttttgttctttctttctatttgctttcctctcctctcttagGAATGGTGTTTTTAGGGCTGAAATGCTACTTTGGTAAACTGATTCATAAAAATAGAATGAGAGTAGAACAGACATTCccattcaaatcaacatagCAGGATGGTTGGAGTGGCGGCCACTGTGCCATTGCAAACGGACATTGTCGCGAGCTAActcattctatttctatggtCAATGCAAGGTGCTGAGCGCCATTTTCTTTTGAACTAATCAAATTACCACGTCAAACAGTTCAATGTCCACTCTACTTTgattattactattatatttCTATGCTGTGAATGCTAAACGCATCTTTGAAACATTAAGATACTCAAAAGAGggtttttttctttgtaattgcAAAGAGGTATAGGCATACATTGGtgggtaatttaaaaaaacattgactcTGCATTTTGAAGACATTATTTTCCCAAACTCTCAATTTGGTTCCAGTGTTAACTCTATCCACTCTTCCCAGTAACATAAATGTACCGTTCATTATCGGAGTCACAAATGGATTAGTCAAAGGTGCAGAGATTTGTAAACCAAAGAACACAAACTgagtctaactctggggaaaCTCACAATTGTCTCCATTGTATGCGTTAAATATTACAGGCACTCGTGATACATTGGGTCTGAAGGTTGTCAGACACTTCCACATGGAGATGGATAAATATCTCCGCTTAcaacagcatttaaaaaaacagcagttaCATTCAGGGCATTTACATTGTATTGTGTCCACCATCACAAAAATGACACTGGATCGCTGAAGCTTACTCACTTGTCTTTTTGTTCGTACTCGCAAGGCTTCTTTCACCAGCTGATATTAAAATGATAAAGGTCATCATGGACGAAATGTTTTACTGAAAGAGGTTTACTGTGGTTTCCCTTTTTAGGCTCTTCAGGAGCTTCTGCTGTTGACAATCTTCATGTGTTGAGAAAAATAACTCAGGTTCCTCAACACACTTTGGCAGGACACCCATCAACTGCTTTAATCACTTGAGGTAATTGCAGGAAACCACTTTCCCTTTGTAAAACTTTGCTTTTGGTGACACACCTATTGATAGACCAAggtattattttatttgttgtgctaatgtatatttgtgtgttttcttgaaAGGAAACAAATGTCTGATTTAACAGTTTTGAGCAGGTGGCTCTACCATAATGTACCAATTCctgttatattgttttgtgcttttacttttttttcccccattcttgttgtataaataaataaaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207436 lncRNA downstream 36076 8718193 ~ 8776266 (-) False G153137
TU207437 lncRNA downstream 92442 8700109 ~ 8719900 (-) False G153137
TU207438 lncRNA downstream 92442 8700109 ~ 8719900 (-) True G153137
TU207435 lncRNA downstream 92442 8718193 ~ 8719900 (-) False G153137
TU207439 lncRNA downstream 92442 8718193 ~ 8719900 (-) False G153137
TU207562 lncRNA upstream 79510 8895786 ~ 8898629 (-) False zgc:55558
TU207565 lncRNA upstream 79510 8895786 ~ 8903823 (-) False zgc:55558
TU207566 lncRNA upstream 79510 8895786 ~ 8903823 (-) False zgc:55558
TU207568 lncRNA upstream 79510 8895786 ~ 8903823 (-) False zgc:55558
TU207647 lncRNA upstream 245020 9061296 ~ 9111224 (-) True G153274
XM_039824554.1 mRNA downstream 1992 8807234 ~ 8810350 (-) False tmem11
XM_039824553.1 mRNA downstream 1995 8807234 ~ 8810347 (-) True tmem11
XM_039824551.1 mRNA downstream 6490 8799475 ~ 8805852 (-) True dhrs7b
XM_039824549.1 mRNA downstream 33580 8772864 ~ 8778762 (-) True jpt2
XM_039824550.1 mRNA downstream 33585 8772864 ~ 8778757 (-) False jpt2
XM_039824633.1 mRNA upstream 34167 8850443 ~ 8856029 (-) False tufm
XM_039825141.1 mRNA upstream 44886 8861162 ~ 8862826 (-) True tmem86b
XM_039823975.1 mRNA upstream 50310 8866586 ~ 8881153 (-) False gys1
XM_039823977.1 mRNA upstream 50310 8866586 ~ 8881072 (-) True gys1
XM_039823980.1 mRNA upstream 79506 8895782 ~ 8901231 (-) True zgc:55558
TU207482 other downstream 79323 8731397 ~ 8733019 (-) True G153172
TU207167 other downstream 367961 8441179 ~ 8444381 (-) True G152952
XR_005641918.1 other downstream 711944 8082138 ~ 8100398 (-) False LOC120574885
TU206683 other downstream 2091699 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 2584228 6182408 ~ 6228114 (-) True G152441
TU207545 other upstream 37484 8853760 ~ 8856957 (-) True tufm
TU207546 other upstream 37484 8853760 ~ 8857571 (-) False tufm
TU207547 other upstream 37484 8853760 ~ 8856957 (-) False tufm
TU207570 other upstream 79510 8895786 ~ 8904340 (-) False zgc:55558
TU207564 other upstream 87805 8904081 ~ 8907662 (-) False zgc:55558

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU1245206 True 1683 TUCP 0.45 3 NC_048576.1 59968268 ~ 59971507 (-)