RNA id: XM_039823977.1


Basic Information

Item Value
RNA id XM_039823977.1
length 3368
RNA type mRNA
GC content 0.47
exon number 16
gene id gys1
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8866586 ~ 8881153 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AACCAATGTGAGTAGCTGGCATTTAACTAAAGCCGCCGCCCCCTTTTCCTCACTCTCCGttggtttcattttttttcgaTTGACTGCGACAGCTGCCAATGTGTTGTTCATCTTCTTGAAATTGGGACGAAACCGTAGGCATGCCGCTGGCTCGCAGCCTCTCTGTCACGTCCCTGTCAGGACTGGAGGAGTGGGACGAGGAGTTTGATTTGGAGGACGCTGTTCTTTTTGAAATTGCATGGGAGGTCGCTAACAAAGTTGGAGGTATCTACACTGTCCTCCAGACCAAAGCCCGTCTGACCGCAGAGGAATGGGGGGAGAACTATTTCCTGGTGGGTCCCTATGTGGAGAGCAACGTGCGCACTCAGGTGGAACTGATCGAGCCCACCAACCCGGCGCTGAAGAGAACCATTGACAAGATGAACTCCAGTGGGTGCAAGGTCTACTTTGGGCGGTGGCTTATCGAGGGCAGTCCCTATGTTATTCTGATTGATGTCGCGTTCACCGCCTGGTCTCTGGACAGCTGGAAGAGCGAGTTGTGGGATCTTTGTGACATCGGCGTGCCGTGGTTTGACCGCGAGGCCAACGATGCCGTGTTGTTTGGCTTCCTGACTGCCTGGCTTCTGGGAGAGTTCGCAGCCCAGAGTGAGCAGCCTTCACACATTGTGGCCCATTTCCATGAATGGTTGGCCGGCCTGGGCCTGGTGTTGTGTAGACATAGACAGTTGTCCATCGCAACCATCTTCACAACTCACGCCACACTGCTGGGACGATACCTGTGTGCTGGAAATGTGGACTTCTATAACAAACTTGCAGAGTTCAACGTGGATAAGGAAGCAGGCGATAGACAGATCTACCACCGCTACTGTTTGGAGCGGGCAGCTGCTCACTGTGCCCATGTCTTCACCACTGTGTCACAGATCACAGCCATTGAGGCAGAGTTTCTGCTCAAGAGGAAACCAGacattgttACTCCCAATGGGCTCAATGTGAAGAAGTTCTCAGCCGTGCACGAGTTTCAAAACCTCCACGCTCAGAGCAAGAATCGCATTCAGGAGTTCGTCAGGGGACACTTCTACGGGCACCTTGACTTCAACCTGGACAAGTGTTTGTTCCTCTTCATTGCTGGAAGGTATGAGTTCTCCAACAAAGGAGCCGACATCTTTTTGGAATCTTTGGCCAGACTCAATTATCTACTGaggGTCAATCACAGTGACGTGACCGTTATTGCATTCTTCATCATGCCGGCTCGGACTAACAACTTCAATGTGGAGACCTTGAAGGGCCAAGCAGTCAGGAAACAGCTCTGGGATACTGCTCAGACTGTGAAGGAACGTTTCGGAAAGAAACTTTATGAGTCACTACTAGTTGGGCAGCTGCCAGATGTGTCAAAGATAATGGACAAAGAGGATTTCACCTTAATGAAGCGTGCCATTTTTGCGACTCAGAGACAATGCCAGCCTCCAGTCTGCACTCATAACATGCTGGAGGACAGCAACGATCCCATCCTTACCTCCGTTCGCCGTATCGGCCTTTTCAACAGCTCTGCTGACCGTGTCAAGATTATCTTTCATCCAGAGTTCCTTTCGTCCACCTCTCCTCTACTTCCAATGGATTATGAGGAGTTTGTAAGAGGCTGCCACCTTGGCGTCTTCCCCTCTTACTACGAGCCTTGGGGCTACACACCAGCTGAGTGCACAGTCATGGGAATTCCATCCATCTCAACTAACCTGTCAGGCTTTGGCTGTTTCATGGAGGAACACATAGCAGACCCCTCAGCGTATGGCATTTATATCCTGGACCGGCGGTATCGGGGGGTGGATGAGTCGTGTAACCAGCTCACGTCCTTCCTGTTTCAGTTTTGCAAGCAGAGCCGGCGCCAGCGGATCATCCAGAGGAACCGTACTGAGCGTCTGAGCGACCTCTTGGACTGGAAATACCTCGGCAGGTATTATATATCTGCCCGTCATATGGCCCTGGCTAAAGCCTTCCCCGACACCTACACGTATGATCTTCAGGAGCCCACCTCAACCTCTGGTTTCCGTTACCCCCGGCCAGCCTCTGTGCCACCGTCTCCATCTCTGTCCCGCCACTCCTCCCCCCACCACAGCGAGGCTGAGGACAACGATGAAGAAGAACGCTATGATGAAGATCTAGAGGCAGAAAAGGACCGGGTAAACATCCGCCAGCCCTACACCCTGCCATTCAAAAACAAGTCTTCTGCTGTACCTGGGGCTAATGGAAACGGCGATGACGATGGAAACGGCGACAAAGActgagaaagacacacacatatacatacagtacatgctaaACCTCACTAGTGAAAGTTTATCACCAATTGTTAAAGTGATCCATGTACTTTATAAATGAGTGCATTTGTGTGAATGGGAGTGATAAATGTAATATTGGCTTGTTGTGAAAAATTGCATCACTGTCTGTGTCTTCCCAACGTGTTCGTACCTCAGATTTTGAGAAATATTAGTGAGTTTGATATGTTTTGGTATTGTTTCAATTACACCAGCAGTGCAACCAGTGACTTGCTTTGTGGAGTAAATGCAGCAGCTAAAAAGGGCTAAACAGCTCAACATGGGAAACAAATCAGGATTGCTGGATTTTGTAGTGTACTAACACTGGATAACATACTGTAGGTCTGAAgcattggaaaaaaaataatagaggATTATTTTGAGTCTCTGGAGGGGTTTTATACTTAAATTAAAAGGTGGGTCAGAGCAGGGAAAATAACATAACCATCCTTTTTACCAGACTCCGTCAGTCATATTTAAACATTCAAAACTGTTTTcctagtttaaagaaatgctcaTGTAAAGACAGTTGCTGTGAATACCCACAAAGAACACTTGTTCTTTTTACTTGTGTTTGGCTTAAaagtgtgatgatgatgatgatgatgatacagTACTTCAAACTCAACTGTCCATCTTATAGCATAATCTCCTTCCTTTCAAATGCCTTGTTGACTACCAAACTTGAAGAAAGGAGAATGGGGGAACcatgtacaacacacacacacaaaaaaaagcatagtgttgcgtgtgttttcattttctttctgcaCCTTCTTGTATTACAGACTTTCAGTGACGATCACCATCACAACCTCGCactcctgtctgtgtgtgtgcttgtgtgaatTATTTCTGGGTTTGCCTGTTATTTTTTTGAAGGTAATAGAGGTGAGACAGACAGCAAAAAAGGGAACAGATGAAGGACATAGAGAGATGGCTGTGAAAGAGCTAGACTTGACTTTTTGTCtgtaacagaagatggaaatgaTTTTACCAGGCATATGCTCACACTGCCTACAATCTTGCACCAGATTAACtaataataaagtataaaaa

Function

GO: NA

KEGG:

id description
K00693 GYS; glycogen synthase

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207436 lncRNA downstream 90320 8718193 ~ 8776266 (-) False G153137
TU207437 lncRNA downstream 146686 8700109 ~ 8719900 (-) False G153137
TU207438 lncRNA downstream 146686 8700109 ~ 8719900 (-) True G153137
TU207435 lncRNA downstream 146686 8718193 ~ 8719900 (-) False G153137
TU207439 lncRNA downstream 146686 8718193 ~ 8719900 (-) False G153137
TU207562 lncRNA upstream 14714 8895786 ~ 8898629 (-) False zgc:55558
TU207565 lncRNA upstream 14714 8895786 ~ 8903823 (-) False zgc:55558
TU207566 lncRNA upstream 14714 8895786 ~ 8903823 (-) False zgc:55558
TU207568 lncRNA upstream 14714 8895786 ~ 8903823 (-) False zgc:55558
TU207647 lncRNA upstream 180224 9061296 ~ 9111224 (-) True G153274
XM_039825141.1 mRNA downstream 3760 8861162 ~ 8862826 (-) True tmem86b
XM_039824633.1 mRNA downstream 10557 8850443 ~ 8856029 (-) False tufm
XM_039824555.1 mRNA downstream 50281 8812330 ~ 8816305 (-) True natd1
XM_039824554.1 mRNA downstream 56236 8807234 ~ 8810350 (-) False tmem11
XM_039823980.1 mRNA upstream 14710 8895782 ~ 8901231 (-) True zgc:55558
XM_039823806.1 mRNA upstream 28875 8909947 ~ 8914504 (-) False LOC120573900
XM_039823807.1 mRNA upstream 28875 8909947 ~ 8914504 (-) True LOC120573900
XM_039824720.1 mRNA upstream 43529 8924601 ~ 8942317 (-) True slc17a7a
XM_039824719.1 mRNA upstream 61987 8943059 ~ 8955286 (-) True slc6a16a
TU207546 other downstream 9015 8853760 ~ 8857571 (-) False tufm
TU207545 other downstream 9629 8853760 ~ 8856957 (-) True tufm
TU207547 other downstream 9629 8853760 ~ 8856957 (-) False tufm
TU207525 other downstream 50310 8812342 ~ 8816276 (-) False natd1
TU207482 other downstream 133567 8731397 ~ 8733019 (-) True G153172
TU207570 other upstream 14714 8895786 ~ 8904340 (-) False zgc:55558
TU207564 other upstream 23009 8904081 ~ 8907662 (-) False zgc:55558
unassigned_transcript_737 other upstream 308312 9189384 ~ 9190066 (-) True LOC120574343
unassigned_transcript_738 other upstream 310914 9191986 ~ 9192402 (-) True LOC120574654
unassigned_transcript_739 other upstream 312546 9193618 ~ 9194157 (-) True LOC120574599

Expression Profile