RNA id: TU207562


Basic Information

Item Value
RNA id TU207562
length 1915
lncRNA type sense_over
GC content 0.40
exon number 3
gene id zgc:55558
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8895782 ~ 8907662 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAACATCAAGTCCTTTGAGGACGTTCACCTCTACAGAGAGCAGATCAACAGGGTGAAGGACAGTGACAGTGTTCCCATGGTGCTGGTGGGGAATAAGAGCGACCTGGGTACCCGCGCGGTGGAGTCGCGGCAGGCGCAGGAGCTGGCACGAAGCTACGGAGTACCATTTGTCGAGACTTCTGCCAAAACCAGACAGGGTGTGGAGGAAGCTTTCTATTCACTGGTACGGGAGATTAGAAGATATAAGGAGACCAACCGCAGCAACAAGAAAAGCAAGAAAAACACTCCGAGACGTTGCGCAATACTATagcaaaccacacacaccagcgcatcTCTTACAGCACTTGTTTCACgctcacgcgcacacacacacacacactgcacctcCTCTGTCATGTTGGAGATGTCCAGCACAGCTCCAGACAGGGAAGCAGACATggcaaaatcctttttttttaatgctgtcaGAGTTTCCACTTACAGTATTTGCCATTTATTCATCCAATGTGCAGTGTCCGTTTAACGCTGTGAATTCAGTTTGTTTTGTTCGGTGACCAAACAACTAGAAACTgcagttttaaaatgatatatatttttttttttttttttttaaggtcagCATTTGTGCAAACTTAAAATTTGACTGTAAAGATAATTACCTTTTACTAACTCTATTCTAATTTTTTCTAGCCAGTGTTTTTAAAAGACTGTTCGGCTCCTGTTGACTTTTTGGGGGCCATGTGTTCACAGTGGTGCGTCACTGCACTTTGCACGGTCACATCAGGTGAGGCGTTCAGTCCAAATCCCAAATTGTTCCAGGACTCAACACGCTAAGGGAGGGGAACATTTTCCTTGGTAAACATCTAACTTCACAAAGTCCCACAAATAACATCAAAACTGTCATATTTACTCGGGCACTGTTTACTTGTGAAAACGCTTTGCTTCCAGATGATTGGTTAAAACCTTTTGAAAGTTTGTAAAAAAATGTCATCCTccccacgttttttttttttttttatagactaATGTGTCCTCTGGGGCTTGAAACACAACAGCAAAGGGCATATGTCAATGAAAAGGCTGTAGCAGGATAGGATCACCACAGTAACAAAGCCACAAAATTGTGTTCCAGACTCTTAGGTGCACTTTATTCATTAattgttatttgttttattgtagAATTTAGGATTAGTTTGTGCAATTTAAAAAGTTTACTCAGGAATATAGTGTTGTATCAGGAACTGAGGAATAGCAGACTGAGAGCTGTGTCAAAAGATGGGTTGAGATCTGATGTCCATCATTAACTTACTGTTTGAAGTGTCAGCCCTGCTGTTTGTTccacacagtcacactttaTTCCAAAGTCCACTTTCAATGCCGTTTTTATGTCAGTCAGTGTTGTTGGTGGTTATGTGGTACTACATACATTTAAACCACACTGATGCTGAAACCAGTGTTTAACTCCAACAGACAGGGCTCAGACACAGTGACAGTCATGTTATCCGATCATGCTGGATGATAAGGATATTCACTAGGGCATCTTTTTTTATAGCAGTGTTTGTCCTCTTTGATAATTACTGTAACCCTAAATTTCTATTTTTGTAGCATTACAAACCACGTTCCCCAATTAAAAAACTTCTGCATTAAGAAACTGCTGTCCACATATTTactaaaattatatttaagtTTAATGAGCTAACTTCAGTTTCATCCTGCTTAGAAGTGAATCCATCTATTAAGGGTTCCTACTTTGCTATGGTGTCAAACCAGCAGCTTCCAAATGCCTCTTATTATCTGAACTTAATGTAGTTCCATTGTTATATGGAGTAACTCTAAAATGTTCAAGTTTCTCACAGACAGCTATGTAAACTCTTTAATGCACTCTGCTGTGATGAGCAAGTAAATTTCTTCAGCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207436 lncRNA downstream 119520 8718193 ~ 8776266 (-) False G153137
TU207437 lncRNA downstream 175886 8700109 ~ 8719900 (-) False G153137
TU207438 lncRNA downstream 175886 8700109 ~ 8719900 (-) True G153137
TU207435 lncRNA downstream 175886 8718193 ~ 8719900 (-) False G153137
TU207439 lncRNA downstream 175886 8718193 ~ 8719900 (-) False G153137
TU207647 lncRNA upstream 162667 9061296 ~ 9111224 (-) True G153274
TU207650 lncRNA upstream 162667 9061296 ~ 9101630 (-) False G153274
TU207653 lncRNA upstream 166367 9064996 ~ 9085687 (-) True G153275
TU207884 lncRNA upstream 288621 9187250 ~ 9194175 (-) False LOC120574599
TU207886 lncRNA upstream 288621 9187250 ~ 9204006 (-) False LOC120574599
XM_039823975.1 mRNA downstream 14633 8866586 ~ 8881153 (-) False gys1
XM_039823977.1 mRNA downstream 14714 8866586 ~ 8881072 (-) True gys1
XM_039825141.1 mRNA downstream 32960 8861162 ~ 8862826 (-) True tmem86b
XM_039824633.1 mRNA downstream 39757 8850443 ~ 8856029 (-) False tufm
XM_039824555.1 mRNA downstream 79481 8812330 ~ 8816305 (-) True natd1
XM_039823806.1 mRNA upstream 11318 8909947 ~ 8914504 (-) False LOC120573900
XM_039823807.1 mRNA upstream 11318 8909947 ~ 8914504 (-) True LOC120573900
XM_039824720.1 mRNA upstream 25972 8924601 ~ 8942317 (-) True slc17a7a
XM_039824719.1 mRNA upstream 44430 8943059 ~ 8955286 (-) True slc6a16a
XM_039824495.1 mRNA upstream 71253 8969882 ~ 8973648 (-) True nme4
TU207546 other downstream 38215 8853760 ~ 8857571 (-) False tufm
TU207545 other downstream 38829 8853760 ~ 8856957 (-) True tufm
TU207547 other downstream 38829 8853760 ~ 8856957 (-) False tufm
TU207525 other downstream 79510 8812342 ~ 8816276 (-) False natd1
TU207482 other downstream 162767 8731397 ~ 8733019 (-) True G153172
TU207564 other upstream 5452 8904081 ~ 8907662 (-) False zgc:55558
unassigned_transcript_737 other upstream 290755 9189384 ~ 9190066 (-) True LOC120574343
unassigned_transcript_738 other upstream 293357 9191986 ~ 9192402 (-) True LOC120574654
unassigned_transcript_739 other upstream 294989 9193618 ~ 9194157 (-) True LOC120574599
unassigned_transcript_740 other upstream 321912 9220541 ~ 9221072 (-) True LOC120574348

Expression Profile