RNA id: TU207650


Basic Information

Item Value
RNA id TU207650
length 378
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G153274
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9061296 ~ 9111224 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gctctcgagcacaataataaacagcagaatcttcagtcttcagactgttcatctgcagatacagctgctctctgctgttgtctctggagaCGGTAAACCGGCCCTGAACTGACTGAGAGTAGTAGATGCTGTCACTATCATATTCAATAGTTGCTACCCattccagtccttttccaggagcctgtctgacCCAGGCCATCCAAGATCTACCAAAGTTAAACCCAGAGGCTGAacaggtcaatctgtgggattctccaggtcttttaaccactggttcagattctgtcagagtctgaccatcaacacctgtcaagcagagagttaaaagcagcagtcctgtcctatagtccatcatgttaaactgtgtgtccactgttc

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207565 lncRNA downstream 157473 8895786 ~ 8903823 (-) False zgc:55558
TU207566 lncRNA downstream 157473 8895786 ~ 8903823 (-) False zgc:55558
TU207568 lncRNA downstream 157473 8895786 ~ 8903823 (-) False zgc:55558
TU207562 lncRNA downstream 162667 8895786 ~ 8898629 (-) False zgc:55558
TU207439 lncRNA downstream 341396 8718193 ~ 8719900 (-) False G153137
TU207884 lncRNA upstream 85620 9187250 ~ 9194175 (-) False LOC120574599
TU207886 lncRNA upstream 85620 9187250 ~ 9204006 (-) False LOC120574599
TU207892 lncRNA upstream 95128 9196758 ~ 9203859 (-) True G153455
TU207893 lncRNA upstream 98028 9199658 ~ 9501467 (-) True G153456
TU207900 lncRNA upstream 115439 9217069 ~ 9224320 (-) False LOC120574662
XM_039825003.1 mRNA downstream 13173 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 24468 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 24711 9020086 ~ 9036585 (-) True sez6l2
XM_039825761.1 mRNA downstream 42556 9011223 ~ 9018740 (-) True kctd13
XM_039825590.1 mRNA downstream 50365 9003265 ~ 9010931 (-) True hirip3
XM_039824654.1 mRNA upstream 242071 9343701 ~ 9345172 (-) True LOC120574364
XM_039824655.1 mRNA upstream 289935 9391565 ~ 9406804 (-) True LOC120574368
XM_039825001.1 mRNA upstream 596013 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 959656 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 959656 10061286 ~ 10149481 (-) False cacna1aa
TU207564 other downstream 153634 8904081 ~ 8907662 (-) False zgc:55558
TU207570 other downstream 156956 8895786 ~ 8904340 (-) False zgc:55558
TU207546 other downstream 203725 8853760 ~ 8857571 (-) False tufm
TU207545 other downstream 204339 8853760 ~ 8856957 (-) True tufm
unassigned_transcript_737 other upstream 87754 9189384 ~ 9190066 (-) True LOC120574343
unassigned_transcript_738 other upstream 90356 9191986 ~ 9192402 (-) True LOC120574654
unassigned_transcript_739 other upstream 91988 9193618 ~ 9194157 (-) True LOC120574599
unassigned_transcript_740 other upstream 118911 9220541 ~ 9221072 (-) True LOC120574348
TU207903 other upstream 118987 9220617 ~ 9221090 (-) False LOC120574348

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
striped catfish (Pangasianodon hypophthalmus) LOC117598871 True 1470 V_segment 0.38 2 NC_047607.1 22170368 ~ 22171945 (+)