RNA id: XM_039825617.1


Basic Information

Item Value
RNA id XM_039825617.1
length 4144
RNA type mRNA
GC content 0.46
exon number 19
gene id sez6l2
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9020086 ~ 9036828 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCCCTCACATCATAGCCGAATGCGTCAACCACACTGTTACCAGCTAGAGGCATCTCACCAGCACAAACCCCGCCGTGTTATCGGGGCCTAAGGCAACAGGATACTGTCCAAGTAGAAGAACACAGGACGCAGCCCGGAAAACAAAGGTCATTCAGTTTTATCTAAAGCCATGGGGTTCACACACCTTGCTGTGATGCTTTCTGTCACCATGATCCACCTAGTTTCAGGTTTGACCTTTAGGACTACTGAAACTGATACACTACCAACATCAACCCCAGACTCGTACCCTCTGGGTGACCTAATCCATGCTGCTCTGCAGAGTAAGGACTACTTAGGAGAGGCTTCAGCAAGCACAGGTACTACCACCAACCCGACACAGGCTGTGCCTGGGCTTGGGCAGACCGAGTCGACAGCAACAGTCATATCACCGGGCCTGCTCACCACAGCTTTAAGCTCCTCTTCTGCTGCCAGCCAGACAGGATCAAGGAATACCATGTCCCCGCTGCCCATAGAGGAGGAGACAACCACCACTCTGATCACCACGACCACCATAACCACAATGCACATGCCAGTACAATGCAATGCAACTTTGTCAGCAATGGAGGATGTTGTCGAGTCACCTGATCCTGCGTCATCATCCTCATCTTTTTCCCCTCTGGAATGCACCTACAGTATTACTGTGTATGCAGGTTATGGTGTGGAAATTCAGGTGAGGAAGGTTAACCTTTCTAAGAAGGAGTCTCTGACGATCATGGGCTATGGAGGTTTGGGACCAGAGCTCCTAGCCAACGAGACCCTGATGAGAGAGGGTCAGGTGATTCGCAGTACAACCAATCAGGTGTACATACACTATCGCAGTCTCCGACAGTCCAACCACGGTGTGTTCAGCCTCCACTATCAAGCCTTTCTGCTGTCCTGCCCGTTCCCTCTGTCTCCTGAGGGCGGCGGAGTGACAGTGACAGATATCCATCCTGGAGGTCAGGCCCACTTCCACTGTGATCCAGGTTTCCAGGTTCGCGGCCATGAGGTTGCTACCTGTgtcaacacaacacaaccacactGGAGCACTCCTGAGCCACAATGTGTCGCTGTTTCTTGTGGAGGGTGGATTCGTAATGCAACAGTTGGCCGAATACTGTCTCCACCACCTCCATCTGTCAGCAACCACAGTAATGGAAACAACCTGAGCTGCCACTGGTTAATAGAAGCCAAAGAGGGACACAGACTCCACCTACACTTTGAGAGGATCGCGCTGGATGAAGATGATGATAAGTTAATTGTGCGCGGTGGAAACAGTTCCCTGTCTCCACCACTCTTTGACTCAGACCTGGATGATGTCCCAGAACGTGGGTTGCTGAGTGAGAGCGCCACACTGTACCTGGAGCTCACAGCTGATTCTTCTTCCATCCCTCTGCTTCTGGCACTGCGATACGAGGcTTTCGATGATGAACACTGCTGGGAGCCCTACATGCCCCATGGAAATTTCAGCAGCAGTGACATCACATATCAGCTGGGCACCACTGTTACCTTCACCTGCGCCCCAGGCTTTGTCATGGAGCAAGGTTCGGGCACGATTGAGTGTGTCGACCCCAGCAATCCCCACTGGAATGACAGCGAGCCTGTGTGCAAAGCTCTGTGTGGAGGGGAGTTGACCGAGCCGTCGGGTACCATCCTGTCTCCTGATTGGCCCCAGAGCTACTCCAAGGGGCTGGACTGTGTATGGCAGATCCATGGCAACGAGGAGAAACGCATTGAACTGGATGTCCAAATTCTAAATATCCGCCACACTGATGTGCTGACCGTTTTTGACGGACGTGATCTAATGTCCCATGTGATCGGACAATACCTGGGGTCCAAAGAGCGTTTCCAGGTTGTGTCTGGGGGGTCAGAAGTCACCATTCAGTTTCAGAGCGATCCAGATGATTCCAGTTTCATCCTGAGTCAAGGATTCCTCATTCATTACCGTGAGGTTGAGCCAAACGACACCTGCCCCACTCTCCCTCAAATTGACTTTGGCTGGATCAGCTCGTCCCACTCCTCCCCTGTGAGAGGCAGTGTGCTGACCTATCAGTGCCAACCAGGATATGACATCAGTGGCTCTGACATCATCACCTGCCAATGGGACCTTTCCTGGAGCAGCAGCCCACCTACATGTGTCAAAGTCCAGCAGTGTCCTGACCCAGGAGAGGTGGTAAACGGAGCGCGCTCAGTGCGCCCCGAGGCAGGTTTTGCAGTTGGAACAGTCGTTCGTTTCTCTTGTAACCAGGGTTATCAACTGGAAGGTCCAAGCCAAATCTCCTGCCACGGCCGAGACACTGGCACCCCCAAATGGAGCGACCGCAGCCCAAAGTGTGTCTTAAAATATGACCCGTGCCCAAACCCTGGTGTCCCTGACAATGGTTACCAAACCTTGTACAAGCACAGCTACCAGGCAGGAGAAACTCTGCGTTTCTTCTGTTATGAGGGCTACGAACTCATCGGCGAGGTCATTATCAGCTGTGTTCCCGGCCATCCCTCTCAGTGGAACAGCCCACCGCCCTTTTGCAAAGTGGCATATGAGGAGCTTTTGGATGATCACAAATTAGAAGTGTCCCAGTCATTTGAGCCGTCCCATCAGATCCTGAGTGAGAACATTGCTTTGGCAATAATTCTGCCAATCATCCTGGTCATCCTCCTGATTGGAGGAATTTACATGTACTATACAAACATCTGCAGACTAGAATGGAAGCCGCTCTTCtggaagtctctctctcacacacactcctacagtCCCATTACAGTCGAGTCCGACTTCAACAACCCGCTGTATGAGGCAGGGGATACGCGGGAGTATGAAGTATCCATTTAAAGGAGAGAATGTCTTGGTGAGAATTGAAAACCACCGAATGATTCAATTCTTTTAGAAGATAGATTCCTTTGTATTATAAGGCCTCACTCCCCTTTTAATATTCATTTCTAATTATCTTTCAGTTTTACCATCCCTGTATCTCTGGTTTATGAATTTGTGGAAGTGCTTTACTTTGATTTGTTGCACTGATATGGTGATCTGCCAAACGTGGGTCCTACTTCACGGTCCAACTTTCTGTATCACTTGGACTGGTGCCTTATGATGGGTAAGAAATTGATAACAAAGTAGAAGAAAAAACAGTTTGGGAGGCATAAGAACAGGAGATGTAAAAAAGGGTGAAGGGAAatggatttatttattaagttaaATTATTATGAGGCCAAAACATTAGAGAACTTGGCAATACTTTATTTGTAACTATCAAAAGTTACAGTCATGAGCATACGCATACACACACTggatgtttttctttcattgtgAGTGGCTcatgttacatttttaagtgtAACAGTAAAAGGGAAGAATACTTTACTTTCAATCATGAGAAAAAGTTTGAGATCAACACAGtcattttctctccttctcactgtctttctctctctctgtgtgtgtgtgtaacacaaacacaaattgaaTGTAAATATCTGACTTAATATTGATTGAGGTTGgtatatatattaaattatatatataagcCTAATATATACACTTATACATGGTGGCTGGGGGTTATATATTTTCATTATATATGTAATGAAAATTCTGTGCCAAAATATAATGTTGAATAATTTATTGTCCCTAAGTGTTTCATCTGTTGTTGCAATACTGTTTACAAAAGCAGTTTATTTTATTCTTCGCTGTTTCTGGAGTGCATAGTCACCCAGTGTCATTTAAGTGTCATGACTCATGACATATAAGGAAAAGGTGAGGACATGAATGTCATTATGCTTAAAGCATGCACTGATTGTAAATTATATTGCTTCTGCTCAATcttgccattatcattatagtTATTGACAGTTATCATTGTTATCAGATTTGATGTTGTATGCACTATGTTGATGAAAAATTACAAACTTGGCTGCTTGCTGTGAtgcattatgtatttatttacaacTGATTGTTTGAACAGTGAATGTAGTCTCATTTACTGTGCCAAATGAAGGATCCAGGAGACTGTTGCTTTGTAGACTTAATTCTTCTCTTATCATCAGTAGCATTTCTTTGCTTCATATATGAATACACTCTTTTGAAGGCAGTAAACTGGAAATAAAGTCTCTGTTGAATGGTGTAAAA

Function

GO:

id name namespace
GO:0007420 brain development biological_process

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207565 lncRNA downstream 116263 8895786 ~ 8903823 (-) False zgc:55558
TU207566 lncRNA downstream 116263 8895786 ~ 8903823 (-) False zgc:55558
TU207568 lncRNA downstream 116263 8895786 ~ 8903823 (-) False zgc:55558
TU207562 lncRNA downstream 121457 8895786 ~ 8898629 (-) False zgc:55558
TU207439 lncRNA downstream 300186 8718193 ~ 8719900 (-) False G153137
TU207647 lncRNA upstream 24468 9061296 ~ 9111224 (-) True G153274
TU207650 lncRNA upstream 24468 9061296 ~ 9101630 (-) False G153274
TU207653 lncRNA upstream 28168 9064996 ~ 9085687 (-) True G153275
TU207884 lncRNA upstream 150422 9187250 ~ 9194175 (-) False LOC120574599
TU207886 lncRNA upstream 150422 9187250 ~ 9204006 (-) False LOC120574599
XM_039825761.1 mRNA downstream 1346 9011223 ~ 9018740 (-) True kctd13
XM_039825591.1 mRNA downstream 9155 9003265 ~ 9010931 (-) False hirip3
XM_039825590.1 mRNA downstream 9155 9003265 ~ 9010931 (-) True hirip3
XM_039825593.1 mRNA downstream 16935 8998880 ~ 9003151 (-) True antkmt
XM_039825594.1 mRNA downstream 16938 8998880 ~ 9003148 (-) False antkmt
XM_039825003.1 mRNA upstream 6585 9043413 ~ 9048123 (-) True cabp5b
XM_039824654.1 mRNA upstream 306873 9343701 ~ 9345172 (-) True LOC120574364
XM_039824655.1 mRNA upstream 354737 9391565 ~ 9406804 (-) True LOC120574368
XM_039825001.1 mRNA upstream 660815 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 1024458 10061286 ~ 10149481 (-) False cacna1aa
TU207564 other downstream 112424 8904081 ~ 8907662 (-) False zgc:55558
TU207570 other downstream 115746 8895786 ~ 8904340 (-) False zgc:55558
TU207546 other downstream 162515 8853760 ~ 8857571 (-) False tufm
TU207545 other downstream 163129 8853760 ~ 8856957 (-) True tufm
unassigned_transcript_737 other upstream 152556 9189384 ~ 9190066 (-) True LOC120574343
unassigned_transcript_738 other upstream 155158 9191986 ~ 9192402 (-) True LOC120574654
unassigned_transcript_739 other upstream 156790 9193618 ~ 9194157 (-) True LOC120574599
unassigned_transcript_740 other upstream 183713 9220541 ~ 9221072 (-) True LOC120574348
TU207903 other upstream 183789 9220617 ~ 9221090 (-) False LOC120574348

Expression Profile