RNA id: XM_039824654.1



Basic Information


Item Value
RNA id XM_039824654.1
length 700
RNA type mRNA
GC content 0.47
exon number 3
gene id LOC120574364
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9343701 ~ 9345215 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


catcaacatgttctctgtagctctgatactgctgctggctgctggatCCTGTGTGAACAGTATTGATCTCATCCAGACAGACTCAATGGTTGTGCAGCCTGGACAGTCTCTGACCATCAGCTGTCAGGTCTCTGGTTATTCTTTGACTGATAACAGCTATGCAACAGGTTGGATCAGACAGAGTGAAGGAAAACCAATGGACTGGATTTCCCATCAGTGGGGAACAAGTGGCCTTCGTCAAAATAATGctctgaagaacaagttcagcTACAGCAGAGACACTTCTGCTCTAACAGTGACTCTAAAAGGACAGAATGTGCAGCCTGAGGACAcagctgtgtattactgtgtacGTCAGCCCACAGTGATACAAACCACCAACAGACCTGCACAAATACCCAGAGTTTGGAGTGAGATCAAACTGGACCAGTCTCCCTCTGAGGTGAAAAGACCTGGAGAGACAGTGAAGATGTCATGTATCATATCTGGTTATAGCATGACAAGCAAGAATATTCACTGGATACGACAGAGACCAGGAGAAGCTCTGGAGTGGATTGGGTGGATGAACACAGGTTCAAACTCTGCTAGCTATGGCAGCTCCTTTCAAAGCCGTTTCATCATGACTGAAGATGTTCCCAGCAGCACTCAGTACCTCGAGGTCCAGagcctgacagcagcagattctgctgtttacttCTGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207935 lncRNA downstream 5835 9246355 ~ 9337866 (-) False LOC120574352
TU207951 lncRNA downstream 40354 9248397 ~ 9303347 (-) True G153508
TU207940 lncRNA downstream 70587 9249829 ~ 9273114 (-) False LOC120574652
TU207952 lncRNA downstream 78334 9258210 ~ 9265367 (-) True G153509
TU207900 lncRNA downstream 119381 9217069 ~ 9224320 (-) False LOC120574662
TU207976 lncRNA upstream 14356 9359528 ~ 9359850 (-) True G153527
TU207998 lncRNA upstream 196946 9542118 ~ 9548305 (-) True G153539
TU207921 lncRNA upstream 257685 9602857 ~ 9603106 (-) True G153481
TU208072 lncRNA upstream 407087 9752259 ~ 9798267 (-) True G153588
TU208076 lncRNA upstream 434117 9779289 ~ 9782563 (-) True G153591
XM_039825003.1 mRNA downstream 295578 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 306873 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 307116 9020086 ~ 9036585 (-) True sez6l2
XM_039825761.1 mRNA downstream 324961 9011223 ~ 9018740 (-) True kctd13
XM_039825591.1 mRNA downstream 332770 9003265 ~ 9010931 (-) False hirip3
XM_039824655.1 mRNA upstream 46393 9391565 ~ 9406804 (-) True LOC120574368
XM_039825001.1 mRNA upstream 352471 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 716114 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 716114 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA upstream 716114 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_758 other downstream 2355 9340910 ~ 9341346 (-) True LOC120574640
unassigned_transcript_757 other downstream 3980 9339271 ~ 9339721 (-) True LOC120574363
unassigned_transcript_756 other downstream 7348 9326463 ~ 9336353 (-) True LOC120574362
TU207918 other downstream 9957 9333180 ~ 9333744 (-) True G153478
unassigned_transcript_755 other downstream 23808 9319287 ~ 9319893 (-) True LOC120574361
unassigned_transcript_759 other upstream 2897 9348069 ~ 9349773 (-) True LOC120574365
unassigned_transcript_760 other upstream 23485 9368657 ~ 9369149 (-) True LOC120574646
unassigned_transcript_761 other upstream 31261 9376433 ~ 9377037 (-) True LOC120574366
unassigned_transcript_762 other upstream 42155 9387327 ~ 9389005 (-) True LOC120574367
TU207939 other upstream 50252 9395424 ~ 9395927 (-) True G153499

Expression Profile