RNA id: unassigned_transcript_760


Basic Information

Item Value
RNA id unassigned_transcript_760
length 404
RNA type V_gene_segment
GC content 0.47
exon number 2
gene id LOC120574646
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9368657 ~ 9369149 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CAGAAGCTCACATCTCATCAGTTTCAACATAAACCATGTTCTCtggagctctgctgctgctgttggcagCTGGATgtgtgaagtgtgaacagtTGACCCAGCCAGCCTCTGTGACTGCGCAGCCAGGTCAACGTCTGACCATCACCTGTCAGGTCTCTTATTCTGTTGACATATACGTTacagcttggatcagacagcctgcagggaaaggactggagtggattaGTAGAGATACAAACGTCAAAGATtcactgaagaacaagttcagtgTAAACTTGGACTCTTCCAGTAACACAGTGACTCTAAATGGACAGAATGTGCAGCCTGAAGACactgctgtgtattactgtgccagagagccacagtaacacaaaccatcagtagacctgaacaaaaacccctca

Function

GO:

id name namespace
GO:0042611 MHC protein complex cellular_component
GO:0042613 MHC class II protein complex cellular_component

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207976 lncRNA downstream 8807 9359528 ~ 9359850 (-) True G153527
TU207935 lncRNA downstream 30791 9246355 ~ 9337866 (-) False LOC120574352
TU207951 lncRNA downstream 65310 9248397 ~ 9303347 (-) True G153508
TU207940 lncRNA downstream 95543 9249829 ~ 9273114 (-) False LOC120574652
TU207952 lncRNA downstream 103290 9258210 ~ 9265367 (-) True G153509
TU207998 lncRNA upstream 172969 9542118 ~ 9548305 (-) True G153539
TU207921 lncRNA upstream 233708 9602857 ~ 9603106 (-) True G153481
TU208072 lncRNA upstream 383110 9752259 ~ 9798267 (-) True G153588
TU208076 lncRNA upstream 410140 9779289 ~ 9782563 (-) True G153591
TU208095 lncRNA upstream 424943 9794092 ~ 9842982 (-) True G153597
XM_039824654.1 mRNA downstream 23485 9343701 ~ 9345172 (-) True LOC120574364
XM_039825003.1 mRNA downstream 320534 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 331829 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 332072 9020086 ~ 9036585 (-) True sez6l2
XM_039825761.1 mRNA downstream 349917 9011223 ~ 9018740 (-) True kctd13
XM_039824655.1 mRNA upstream 22416 9391565 ~ 9406804 (-) True LOC120574368
XM_039825001.1 mRNA upstream 328494 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 692137 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 692137 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA upstream 692137 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_759 other downstream 18884 9348069 ~ 9349773 (-) True LOC120574365
TU207965 other downstream 23442 9344716 ~ 9345215 (-) False LOC120574364
unassigned_transcript_758 other downstream 27311 9340910 ~ 9341346 (-) True LOC120574640
unassigned_transcript_757 other downstream 28936 9339271 ~ 9339721 (-) True LOC120574363
unassigned_transcript_756 other downstream 32304 9326463 ~ 9336353 (-) True LOC120574362
unassigned_transcript_761 other upstream 7284 9376433 ~ 9377037 (-) True LOC120574366
unassigned_transcript_762 other upstream 18178 9387327 ~ 9389005 (-) True LOC120574367
TU207939 other upstream 26275 9395424 ~ 9395927 (-) True G153499
unassigned_transcript_763 other upstream 38705 9407854 ~ 9408482 (-) True LOC120574369
unassigned_transcript_764 other upstream 51003 9420152 ~ 9420698 (-) True LOC120574660

Expression Profile