RNA id: TU207976


Basic Information

Item Value
RNA id TU207976
length 234
lncRNA type inter_gene
GC content 0.51
exon number 2
gene id G153527
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9359528 ~ 9359850 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CtataaaaacatcacatcagGCTGTCAGTGGAGTTCACAGCACGTCAGTTTCAACATAAACCATGTTCTCtggagctctgctgctgctgttggcagCTGGATgtgtgaagtgtgaacagttgacccagccagcctctgtgactgtgcagccaggtcaacgtctgaccatcacctgtcaggtctcttattctctcagcagctactacacagcttggatcagacagcctgcaggga

Function

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
ko04142 Lysosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207935 lncRNA downstream 21662 9246355 ~ 9337866 (-) False LOC120574352
TU207951 lncRNA downstream 56181 9248397 ~ 9303347 (-) True G153508
TU207940 lncRNA downstream 86414 9249829 ~ 9273114 (-) False LOC120574652
TU207952 lncRNA downstream 94161 9258210 ~ 9265367 (-) True G153509
TU207900 lncRNA downstream 135208 9217069 ~ 9224320 (-) False LOC120574662
TU207998 lncRNA upstream 182268 9542118 ~ 9548305 (-) True G153539
TU207921 lncRNA upstream 243007 9602857 ~ 9603106 (-) True G153481
TU208072 lncRNA upstream 392409 9752259 ~ 9798267 (-) True G153588
TU208076 lncRNA upstream 419439 9779289 ~ 9782563 (-) True G153591
TU208095 lncRNA upstream 434242 9794092 ~ 9842982 (-) True G153597
XM_039824654.1 mRNA downstream 14356 9343701 ~ 9345172 (-) True LOC120574364
XM_039825003.1 mRNA downstream 311405 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 322700 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 322943 9020086 ~ 9036585 (-) True sez6l2
XM_039825761.1 mRNA downstream 340788 9011223 ~ 9018740 (-) True kctd13
XM_039824655.1 mRNA upstream 31715 9391565 ~ 9406804 (-) True LOC120574368
XM_039825001.1 mRNA upstream 337793 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 701436 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 701436 10061286 ~ 10149481 (-) False cacna1aa
XM_039824122.1 mRNA upstream 701436 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_759 other downstream 9755 9348069 ~ 9349773 (-) True LOC120574365
TU207965 other downstream 14313 9344716 ~ 9345215 (-) False LOC120574364
unassigned_transcript_758 other downstream 18182 9340910 ~ 9341346 (-) True LOC120574640
unassigned_transcript_757 other downstream 19807 9339271 ~ 9339721 (-) True LOC120574363
unassigned_transcript_756 other downstream 23175 9326463 ~ 9336353 (-) True LOC120574362
unassigned_transcript_760 other upstream 8807 9368657 ~ 9369149 (-) True LOC120574646
unassigned_transcript_761 other upstream 16583 9376433 ~ 9377037 (-) True LOC120574366
unassigned_transcript_762 other upstream 27477 9387327 ~ 9389005 (-) True LOC120574367
TU207939 other upstream 35574 9395424 ~ 9395927 (-) True G153499
unassigned_transcript_763 other upstream 48004 9407854 ~ 9408482 (-) True LOC120574369

Expression Profile