RNA id: unassigned_transcript_758



Basic Information


Item Value
RNA id unassigned_transcript_758
length 354
RNA type V_gene_segment
GC content 0.47
exon number 2
gene id LOC120574640
representative True

Chromosome Information


Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9340910 ~ 9341346 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence


atgatggactataggacaggactgctgcttttaactctctgctgggcaggtgttgatggtcagactctgacagaatctgaaccagtggttaaaagacctggagaatctcacagattgacctgtacagCCTCTGGGTTTGACTTTGGTAGCTCTTGGATGGCCTGGGTCAGACAGGttcctggaaaaggactggagtgggtAGCAACTATTGAATATGATAGTGACAGAATCTTCTACTCTCAGTCAGTCCAGGGCCGGTTTACCGtctccagagacaacagcagagagcagctgtatccgcagatgaacagtctgaagactgaagattctgctgtttattattgtgctcgatAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU207935 lncRNA downstream 3044 9246355 ~ 9337866 (-) False LOC120574352
TU207951 lncRNA downstream 37563 9248397 ~ 9303347 (-) True G153508
TU207940 lncRNA downstream 67796 9249829 ~ 9273114 (-) False LOC120574652
TU207952 lncRNA downstream 75543 9258210 ~ 9265367 (-) True G153509
TU207900 lncRNA downstream 116590 9217069 ~ 9224320 (-) False LOC120574662
TU207976 lncRNA upstream 18182 9359528 ~ 9359850 (-) True G153527
TU207998 lncRNA upstream 200772 9542118 ~ 9548305 (-) True G153539
TU207921 lncRNA upstream 261511 9602857 ~ 9603106 (-) True G153481
TU208072 lncRNA upstream 410913 9752259 ~ 9798267 (-) True G153588
TU208076 lncRNA upstream 437943 9779289 ~ 9782563 (-) True G153591
XM_039825003.1 mRNA downstream 292787 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 304082 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 304325 9020086 ~ 9036585 (-) True sez6l2
XM_039825761.1 mRNA downstream 322170 9011223 ~ 9018740 (-) True kctd13
XM_039825590.1 mRNA downstream 329979 9003265 ~ 9010931 (-) True hirip3
XM_039824654.1 mRNA upstream 2355 9343701 ~ 9345172 (-) True LOC120574364
XM_039824655.1 mRNA upstream 50219 9391565 ~ 9406804 (-) True LOC120574368
XM_039825001.1 mRNA upstream 356297 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 719940 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 719940 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_757 other downstream 1189 9339271 ~ 9339721 (-) True LOC120574363
unassigned_transcript_756 other downstream 4557 9326463 ~ 9336353 (-) True LOC120574362
TU207918 other downstream 7166 9333180 ~ 9333744 (-) True G153478
unassigned_transcript_755 other downstream 21017 9319287 ~ 9319893 (-) True LOC120574361
unassigned_transcript_754 other downstream 32531 9306764 ~ 9308379 (-) True LOC120574360
TU207965 other upstream 3370 9344716 ~ 9345215 (-) False LOC120574364
unassigned_transcript_759 other upstream 6723 9348069 ~ 9349773 (-) True LOC120574365
unassigned_transcript_760 other upstream 27311 9368657 ~ 9369149 (-) True LOC120574646
unassigned_transcript_761 other upstream 35087 9376433 ~ 9377037 (-) True LOC120574366
unassigned_transcript_762 other upstream 45981 9387327 ~ 9389005 (-) True LOC120574367

Expression Profile