RNA id: XM_039825591.1


Basic Information

Item Value
RNA id XM_039825591.1
length 2402
RNA type mRNA
GC content 0.43
exon number 12
gene id hirip3
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9003265 ~ 9010931 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCTGTAACTTCCGGGGGGTCCTACTGCCGCCAAAAAGAATCAAATAGCCATAGTTAGAAATGAAGGTGTCTGAGAAGGAAAGAGCAGGTATCCGCAGGTTTGTGTGTGCTCAACTCCGTGATGAGCCAGACCTCAGCACACTGACCTTAGGAATTTTAAAAAGGCTATATCTGGCACATGTGGGATGTGAATCACTAAGTCCAGAGGCCAGAAATGTCATGAAAGAGGTGGTTAAAGAGGAACTCATGAAAATGCAGGAAAAAGATGAAAATGGAAGTGAGTTGGAGACTGCGAAGCCCCGAAACAAAAGGAAGAGAGACAAGGAAAATGACGAGATCATAAGTGGtaaagaagatgatgatgatgacgacgatGATGATGAATCCAGGGCAAAGAAATCCCGTCGTCAGTCAACCTCATCATCAGAATCGGAAGACAAAGAGGAAGGTGAAACTGGAAGTGAGGAGGAAGCGCAAATTAAATCTGAGGATAAAGAGCAAGAGGTGAAAAACTCCAAGCGAATAAAAAATGGAAAGGGTAAACCGCAGATAAACAGTGAAGACTCGTCAGATGAGGAAATTAATAAgtcaaaaaaaaagaggaatgaCAGTGACTGTGATGACAGACCAAAAGAAATGGTGATAAAAAGAGCAAATGCTACAAAGACTGGAGAGACCAGAAGCAGCAATACAAGTCAACCGTCATCAGAGAGTGATGAAGAGAATGGAACCGACACGGATAGCAAGTCACTAACGAGTGAAAAAGACAACGGCAATGACTCCTCAGATGACGGTGAAAAAGAAGAAAAAGTCTCTGTGGAAAAGAGAGATAACGACCCAGAGTCCGATTCATCGTCACTCCCCTCAATTGAGGATGAAAAGAATAGcggaaaaaaaaattcacaagatgataaaaagaagaaaaccatgaaaaaagaaaaaagcgacaaaggTCAAAAGCAAGGTGACAAAGCTGTTGTGAGGCTCAAGCACTTCATTTCTCTCTGTGGTCTGAGGCCCAATTACAAGAAGCTCCTCGATGGCTGTCGCTCTGTTCGCTCCCAGGTGGCTGTTCTGAAGAAGGAGCTTGAAGAACTTGGTGTCCAGGGTCAGCCATCTGTTAAGAAGTGCAAAATAGTCCGAATGAAAAGAGAGGAAACTCAGGAACTAGCAGAGCTTGATGTCAGCAACATCATTGCCACAAAAGAATCGGAAGACAAAGAGGAAGGTGAAACTGGAAGTGAGGAGGAAGCGCAAATTAAATCTGAATCTGAGGATGCAGAGCAAGAGGGCAAAAACTCCAAGCGAATAAAAAATGGAAACCGTAAACCGCGGATAAACAGTGAAGACTCGTCAGATGAGGAAATTAATAAGTccaaaaaaaagaggaatgaCAGTGACTGTGATGACAGACCAAAAGAAATGGTGATAAAAAGAGCAAATGCTACAAAGACTGGAGAGACCAGAAGCAGCAATACAAGTCAACCGTCATCAGAGAGTGATGAAGAGAATGGAACCGACACGGATAGCAAGTCACTAACGAGTGAAAAAAACAACGGCAATGACTCCTCAGATGATGGTGAAAAAGAAGAAAAAGTCTCGGTGGAAAAGAGAGATAACGACCCAGAGTCCGATTCATCGTCACTCCCCTCAATTGAGGATGAAAAGAATAGCGGAAAAGAAAATTCACAAGatgataaaaagaagaaaaccgtgaaaaaagaaaaaagcgacagAGGTCAAAAGGGTGACAAAGCTGTTGTGAGGCTCAAGCGCTACATTTCTCTCTGTGGTCTGAGGCCCAATTACAAGAAGCTCCTCGATGGCTGTCGCTCTGTTCGCTCCCAGGTGGCTGTTCTGAAGAAGGAGCTCGAAGAACTTGGTGTCCAGGGTCAGCCATCTGTTAAGAAGTGCAAAATAGTCCGAATGAAAAGAGAGGAAACTCAGGAACTAGCAGAGCTTGATGTCAGCAACATCATTGCCACAAAAGGTCGACCTAAACGCAGAGCAGCCTCAGCATGGCAGGAAAAAAGCGAGCCTCAGTCCTCGACATATCTGCACACTCTGAACTCCGGCTCTGACAGTAATGAGGAAAACGATTCACACAGAGGGCGCAGGAGAACCGACTGGGCCAACCTGCAGGGGATCATCAGTGATGATGCGGACAGCAACTGACATGGACAATTCCTCTTGCAAGCGGTTGCAGTTTTTCAGAGGCCACTTTGGATGTGGACGTTCCCTTTTCTTTGTTCAAGTCGATTTTTGGTCTTTACAAATTATTTTGATACTGAATGTGAtactaaatatttttaaaaccttgATAAACTGATACATGGGGTGACATGTATTGTAATGTAAAATGTACATCTGttatatatttcaaataaaagtattttgctCTAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207565 lncRNA downstream 99442 8895786 ~ 8903823 (-) False zgc:55558
TU207566 lncRNA downstream 99442 8895786 ~ 8903823 (-) False zgc:55558
TU207568 lncRNA downstream 99442 8895786 ~ 8903823 (-) False zgc:55558
TU207562 lncRNA downstream 104636 8895786 ~ 8898629 (-) False zgc:55558
TU207439 lncRNA downstream 283365 8718193 ~ 8719900 (-) False G153137
TU207647 lncRNA upstream 50365 9061296 ~ 9111224 (-) True G153274
TU207650 lncRNA upstream 50365 9061296 ~ 9101630 (-) False G153274
TU207653 lncRNA upstream 54065 9064996 ~ 9085687 (-) True G153275
TU207884 lncRNA upstream 176319 9187250 ~ 9194175 (-) False LOC120574599
TU207886 lncRNA upstream 176319 9187250 ~ 9204006 (-) False LOC120574599
XM_039825593.1 mRNA downstream 114 8998880 ~ 9003151 (-) True antkmt
XM_039825594.1 mRNA downstream 117 8998880 ~ 9003148 (-) False antkmt
XM_039824494.1 mRNA downstream 4895 8973823 ~ 8998370 (-) True xpo6
XM_039824495.1 mRNA downstream 29617 8969882 ~ 8973648 (-) True nme4
XM_039824496.1 mRNA downstream 30010 8971080 ~ 8973255 (-) False nme4
XM_039825761.1 mRNA upstream 292 9011223 ~ 9018740 (-) True kctd13
XM_039825617.1 mRNA upstream 9155 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA upstream 9155 9020086 ~ 9036585 (-) True sez6l2
XM_039825003.1 mRNA upstream 32482 9043413 ~ 9048123 (-) True cabp5b
XM_039824654.1 mRNA upstream 332770 9343701 ~ 9345172 (-) True LOC120574364
TU207564 other downstream 95603 8904081 ~ 8907662 (-) False zgc:55558
TU207570 other downstream 98925 8895786 ~ 8904340 (-) False zgc:55558
TU207546 other downstream 145694 8853760 ~ 8857571 (-) False tufm
TU207545 other downstream 146308 8853760 ~ 8856957 (-) True tufm
unassigned_transcript_737 other upstream 178453 9189384 ~ 9190066 (-) True LOC120574343
unassigned_transcript_738 other upstream 181055 9191986 ~ 9192402 (-) True LOC120574654
unassigned_transcript_739 other upstream 182687 9193618 ~ 9194157 (-) True LOC120574599
unassigned_transcript_740 other upstream 209610 9220541 ~ 9221072 (-) True LOC120574348
TU207903 other upstream 209686 9220617 ~ 9221090 (-) False LOC120574348

Expression Profile