RNA id: XM_039824496.1


Basic Information

Item Value
RNA id XM_039824496.1
length 825
RNA type mRNA
GC content 0.50
exon number 5
gene id nme4
representative False

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8969882 ~ 8973648 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

tttagATTTAATGAATATATAACTGTTCGACATGCTTGGCACACAGTCAAAGAGACTTTACCTCCGAGGCTCAACGTTCAGCCTATTTGTTTAAACTTAACGGGGGCGTTTGCGAAATCAAATTCGCTTGCCAAACTCATGGGGTCATGAACTGGAAATAGGTTAGCGACACAGGAGatactgatgatgatgagggtAACAGCGATGCTTGAGAAACAGTGACCTGCGGTGTGCGTAATCGTGCCAAAGCCAGTGCGCATTCTGCGTAATGGACGAGGCACAGTACCATGTAGCCTACGACACCCGAACATTTTTCTCAGGAGGAAACTTCCATACAGTGTTCCAGATGTAAGGGAGCGGACTCTTATTGCTGTAAAGCCAGATGGAGTTCAACGTCGTCTTGTGGGACAAATAATTCAGCGGTTTGAGCAGCGGGGCTTCAAGCTGGTTGGCCTGAAAATGTTGCAGGTGTCTGATGATCTCCTGTCTCAGCACTACTGTGAACTGAGGACTAAGCCCTTCTATCCTAGGCTGCTGCATTACATGACCTCAGGGcctgttgttgccatggtGTGGGAAGGGCACAAAGTAGTCCAGACGTCGCGTATGATGGTGGGACATACTAACCCAGTGGAGGCCCAGGCAGGCACAGTCAGAGGAGATTTCAGCTTTCATGTCAGCAGGAACGTAGTCCATGCCAGTGATTCACCAGAGGGGGCACAGAGGGAGATCCAGCTGTGGTTTCAGAGAACGGAGCTCCTGAACTGGGACTGCTGTGACCAGACCATGACCTGTGAAGTGTGAAGACTCTGCGAGCCGGAAACA

Function

GO:

id name namespace
GO:0006165 nucleoside diphosphate phosphorylation biological_process
GO:0006183 GTP biosynthetic process biological_process
GO:0006228 UTP biosynthetic process biological_process
GO:0006241 CTP biosynthetic process biological_process
GO:0005524 ATP binding molecular_function
GO:0004550 nucleoside diphosphate kinase activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207565 lncRNA downstream 67257 8895786 ~ 8903823 (-) False zgc:55558
TU207566 lncRNA downstream 67257 8895786 ~ 8903823 (-) False zgc:55558
TU207568 lncRNA downstream 67257 8895786 ~ 8903823 (-) False zgc:55558
TU207562 lncRNA downstream 72451 8895786 ~ 8898629 (-) False zgc:55558
TU207439 lncRNA downstream 251180 8718193 ~ 8719900 (-) False G153137
TU207647 lncRNA upstream 88041 9061296 ~ 9111224 (-) True G153274
TU207650 lncRNA upstream 88041 9061296 ~ 9101630 (-) False G153274
TU207653 lncRNA upstream 91741 9064996 ~ 9085687 (-) True G153275
TU207884 lncRNA upstream 213995 9187250 ~ 9194175 (-) False LOC120574599
TU207886 lncRNA upstream 213995 9187250 ~ 9204006 (-) False LOC120574599
XM_039824719.1 mRNA downstream 15794 8943059 ~ 8955286 (-) True slc6a16a
XM_039824720.1 mRNA downstream 28763 8924601 ~ 8942317 (-) True slc17a7a
XM_039823806.1 mRNA downstream 56576 8909947 ~ 8914504 (-) False LOC120573900
XM_039823807.1 mRNA downstream 56576 8909947 ~ 8914504 (-) True LOC120573900
XM_039823980.1 mRNA downstream 69849 8895782 ~ 8901231 (-) True zgc:55558
XM_039824494.1 mRNA upstream 568 8973823 ~ 8998370 (-) True xpo6
XM_039825593.1 mRNA upstream 25625 8998880 ~ 9003151 (-) True antkmt
XM_039825594.1 mRNA upstream 25625 8998880 ~ 9003148 (-) False antkmt
XM_039825591.1 mRNA upstream 30010 9003265 ~ 9010931 (-) False hirip3
XM_039825590.1 mRNA upstream 30010 9003265 ~ 9010931 (-) True hirip3
TU207564 other downstream 63418 8904081 ~ 8907662 (-) False zgc:55558
TU207570 other downstream 66740 8895786 ~ 8904340 (-) False zgc:55558
TU207546 other downstream 113509 8853760 ~ 8857571 (-) False tufm
TU207545 other downstream 114123 8853760 ~ 8856957 (-) True tufm
unassigned_transcript_737 other upstream 216129 9189384 ~ 9190066 (-) True LOC120574343
unassigned_transcript_738 other upstream 218731 9191986 ~ 9192402 (-) True LOC120574654
unassigned_transcript_739 other upstream 220363 9193618 ~ 9194157 (-) True LOC120574599
unassigned_transcript_740 other upstream 247286 9220541 ~ 9221072 (-) True LOC120574348
TU207903 other upstream 247362 9220617 ~ 9221090 (-) False LOC120574348

Expression Profile