RNA id: XM_039824494.1


Basic Information

Item Value
RNA id XM_039824494.1
length 6094
RNA type mRNA
GC content 0.45
exon number 24
gene id xpo6
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8973823 ~ 8998370 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

AAGTTGAGAAACAAACCCTATGAGCAAACCCTGTAACCAGAAGCTAGCTAGTTGTATTCTTCAGCCGCCCTCAGCATTGAGAAGGGGAATAACAGGAACAAGCGCGCATAGTATTATATATTTAGTGTTATTACAAATGCGTCAGATGTATAACTTAAGTGTGCATATTCACCCGCTTTGAAGTTACAAACGGTAAAGGCAAATTGTCGCGACCAATAGCCGTTGAAGCATGTCGACGTTTGACAGAATGCTTTCATCCTTCTAGAAAAGCTAGCGAGTTAGCCATCCGCTGCAACGTTAGCAGCTGGGTAACTCAGCTTCGAACCGCTTGACAGAGAAAGCCAATTAACGTTGCACATTTCTCCGGTGCTGCAGCCACGTTAGATTTTCCACTAAACATATTTCTATATTTAACCTGACGGTAAATGGAAATTACACGACAATGCAGCTAGCTAACTCATCAATTCGAGATAGCTGATTTAATCTTAAGCCTTTAGCAATGCTTGGTaagcgaaaacacgttttattcgAGCAAGGTAAAATTTTGCTGTGTGTTTAACGTTTGTTATTGTAAGCACAGTCAACGACGCCAACCTTTGCTAGCTAGTTTTGTGTAGAGTATCGACCGAAGCAGGCGAGCAGACCATGATGAGCCCCCTCTGCGGTTACGTTAGCCAGCAACacctaagctaacgttagctagctacagaatTGGCTAGCTAGAGAGCTAATGTTGGCTTATTAGTGAAATTAATTCGAGAACAAGTAAACTGAAGAAAGCATCTGAGCCAGCTAAACATGGCTTCAGAGGAGGGATCACTGCGTGCACTGGAGAGCCTTATGACTGAGTTCTTTCACAGCTGCACAACCAATGAGCGGAAGAGAGAAATAGAAGAGCTGCTGAATAACTTCGCACAGCAGACTGGAGCGTGGCGCCACTGCTTGTTCTTTCTCTCCAATACTCGGAATGAGTATGTAATGATGTACAGCCTCACAGTTTTTGAAAACCTGGTAAACAAGATGTGGATTGGAGTGGCTTCACAAGACAAGATGGAGATTCGCAGCTGTCTGCCCAAACTCCTACTTGCTCAACACAAATCGGTGCCCTATTTCATCCGTAACAAACTGTGCAAAGTTATCGTCGACATTGGTCGCCAGGACTGGCCGATGTTCTACCATGATTTCTTTACAAGCACCCTTCAGTTGATCCAGTCCCCAGCTCTGGCTCCATTGGGCTTGATGATGTTAAAAACCACATCAGAGGAACTTGCGTGTCCTCGAGAAGACCTGAGTGTCGCCAGGAAAGATGAGCTGCGTAAACTGCTGCTGGAGCAGGTACCGACAGTGCTTGGACTGTTGACAGATATTCTGGAGACCTATTGGGACAAGCACAGTGTCATAGCTTCCACCCCGCCTCCCTCACCCACCTCAGGGGAAAGTGTGGAATTGCTGGGCAGTTTGTTTCAGGGCAGCCAGTACTCAAAGCTGCTTTGCCAGCCCATGGCAGCATTGGACAATGAGAGTCAGCAGCTCTGTTGTCTCGTTTTGGAGTGTTTGGCTCACCTGTTCAGCTGGATCCCTCTGTCCACAAGCATCACACCCACCCTGCTGGCATCAATTTTCCATTTTGCACGTTTTGGTTGTGATCTTCGGACAAAGGCCAAGACAGGATGCTTCATTTCCTcaaactcctcctcctctaatGGTCAGCTTAATCCTGGGACAATGCTACCAACATCGAATGGAGGAGGGCGAAATGGACAACAGAGTGAGGGCAACAAGGTGGATCGTGCCCGGCTTGGTGTACTCGCCATGACCTGTGTCAACGAGCTTGTGTCAAAGAACTGTGTGCCAATGGATTTTGAGGAGTACCTGCTGCGCATGTTCCAGCAGACCTTCTTTCTCCTGCAGAAGCTGACACGAGAGAATAACGCCCATACCATCAAGAGCCGCCTACAGGAACTTGATGAGAGTTACTTGGAAAAGTTCACAGATTTTCTGCGCCTGTTTGTCAGTGTTCACTTGAGGCGGATTGAGTCCAGTCCTCAGTTTCCAATTGTAGAGTTTCTTGGCCTGCTTTTCAAGTTCACCTTCAACCAGCCTACCCATGAAGGCTACTTTGCCTGTTTGGATATATGGAGTGTCTTTTTGGATTTTCTAACAACCAAAATCAAAAGCAGACTCGCTGACCGAGAAAGTGTTCTAAATAGGTACAAAGATGCCTTAGTTATGCTATTGAGGGAAGTTCTGAATCGCATACAGTTCAGATACAATCAGGCCCAGTTAGAAGAGCTGGATGATGAGACTCTGGATGATGATCAACAGACCGAGTGGCAAAGGTACCTGCGTCAGAGTCTGGAGGTGGTAGCCAAGGTGATGGAGCTGCTCCCATCCCATGCTTTCTCTACTTTGTTTCCAGTCCTCCAAGATAATTTGGACGTATACCTGGGTTTGCAGCAGTTTATTGTCACCAACGGCACAAATCGGAGGCTTAATATCTCTGCAGAGAATGATTGCCGTCGACTTCACTGTTCTCTCAGGGACCTCAGCTCTCTACTTCAAGCTGTCGGACGCTTGGCTGAACATTTCATTGGGGAAGTTTTTGCTGCACGTTTCAATGACGCCCTGGTAGTGGTGGAGAGGTTGGTTGAAGTGACTTGCTACGGCTCTCAGACCAGCCTTTATGACCTGGAGACCGCTGTGCCTTCTGTGCTCAAGCCAGACCTCATTGACGTACACGCACAAGCCCTTGCTGCTTTGCAAGCCTACTCTCATTGGCTTGCACAGTTCTACAGTGAGGTCCACAGTCAAAACCAGAGCCAGTTCATGAACCTCATCACATCGACAATAGATGCCAGTAGCCCACTCATCACAGCAAAGgTACCTGAAAAGTTGCTGCTCTCAGCATGTCATCTGATGGTTTCCATCACCTCTACAGTGAGGCCTGTGTTCTTGGTCACTTTGCCAGCTGTTCGGAACATCTTCAACCTCATTACTGCAGAGAATCAGACCCGCAGACTTCCCCAAGAGGCTCACATGTTGGTGTGTAGGGCTTTGTCCAACATGCTGCTTCTGCCGTGGCCGAATTTACCCGAGAGTGAGCAGCAGTGGCAAACCCGCTCCAGCAACCATGCCAGCCTACTGGCAGCACTCACTCGTGAATATAAGGGAATAAGAGGGACAGTAAACATTACTCCACGGCAACCCGATCTGAATAACATGAAAGCGGTGATACAGCAGACCCTGCCTGTGCTTAGAGACGTAGTGGACAGCATTTCTGGGGAATCCACCAAATCACGTCAGATCTGTTACCAGAGTCTTCAGGAATCTGTCCAAGTGTCCCTCAGCCTCTTCCCAGTGTTTATTCAGCAGCCAGATGTGACAGACGAGATGTTGGCCTTCTTCTTGACGCTGTTTCAGGCGTTGCGAGTCCAGATGGGTGTTGCCTTTACAGGACAGATTATTCACACTTTCCTCAGCATGTTCaccagGGAACAGCTGGCAGCCAGTATTTTGCAAGAGGGCAGTGCGGGGTGTAGAGTCGTACAGAAGTTCCTGAAAATCCTGCAGGTGGTGGTGCAAGAGCCTGGTCAAGCTTTCAAGCCCTTCCTACCCAGCATCCTCTCTCTGTGCATGGAGCAGGTTTACCCAGTTGTGGCAGAGAGGTCTTCCCCAGACGTCAAGGCTGAGATGTTTGAGTTGCTATACCAAATACTTCACCAAAACTGGAGGTACTTCTTTAAAACGTCAGTGTTAACAAGTGTCCAAAGAGGAGCTGCTGAAGAGACCATGGAAAATGAGGCCCAGTTCACAGCTGCTATGCAGGCTTTTGGACAGTCTTTCTTGCAGCCTGACATCCACCTCTTCAAGCAGAATATCTTCTATTTGGAGTTACTCAACAGCAAGCACAAGTTGTATCACAGAAAGCTTTTCCGGACCTCGATGCTCTTCCACTTCATCAACGTGCTGCTGCAGGTCCTTCTCCACAAAAGTCACGACCTTCTTCAGGAGGAAATCACCCTTGCTATTTACAACATGGCCTGTGTGGACTTTGATGCCTTCTACTCTGCCTTCATGCCAGAGTTCCTCAATGGCTGCCAGGGTGTGGACACCAGCCAACGGGCTGTTCTCGCACGCAACTTCAAGCTTGAACGGgaCTTGCCTTCATTCACTCAAAGCGTGCAGCGGCTGGTGAATGACCTTCGCTACTACAGACTGTGTAATAGTAGCCTGCCGACTGGCACCATCAAGCTATAGCACGCACGACTGCTGGAACCACTCCACACATCAACTATGATCTTCAAGGACTGCCTGTGCTGACCACTTTGCCCAACACTCCTACTCCAATCCAGCTTTGCTCCGTCTATTCAAAGTAATCGGAAGGAACAACACCCATCGTATTGTTGAGTAGTTGGAGGTTGAGGATGCTGCTGATGTTTCTCTTTGATCTCTACTGTAGAAGGTTGGcgcgttattttttttaaagcagcgcCCGCCTAATGTGTTGCCAATGATAATTTGGCAAGAAATGTAAACCTGGTCTGCAGTTGGCTTTTGCCCAGACCTAGAGCAGTCTGAGCCAGGCCTTCTTTCCCATACGTCCAGAACAAAGCTGGACTGGGACTGAGCACTTTGAACTCATTTTGAGTTTTTAATATGTCTGCTTTTATTCATTTtgcctttaatttttttcatctCCAAAGGAGACAGACTCTCAACTTAAGATCTTTCATATCATTCCATTCTGAAAAAGTGAAAATCTGCTTGATTAATAAAGTGCTTTTTTTTAGTAAAACTCACTCTTGCAGTGGTTTGTAAGAATAATGGTTGTATTGAGAGATTCATAGGCTTGTCTGTATGTTTACACTGTTTTGCTTTACACTTGTCAATGGCATCTTTTTAAAATTCCTTTTTAACTTAAATACGTCTACTTAACTGCTGAATAATTGTTTAGGCCTTGAATTGTttaacacatgcacaaataatCAAATAGTTTGTTTAGGTCTTTACAGAGCCAATGGATAATGGCGATTTTAATTGTGAGAATTGCTAAAGCTTTTGACAGAATGCGAAGCATCAACATGTGACAAATGCTGCGTGAGGACGCAGCATGCAGAAGAAAGGAAGCGTCAGCGTAGAAAGAATAATTAAAACAGTAATGATGAGGTGAAACAACTACACCAACACATGTTGCATtaccttttcttttgtttgagtTCACGGTGAGGATTGAAGCTCAACGTTGGTGTATGTCTATCAGGGCTTCTAGTAGCTTTGAAGCTTTTCTTTGGCTGCTGTCTTAATACTGAAGGCAAATGCTTGTTCAGTTAGGATGGTAGGTAAACCTACATAGTAAAGCTATGCAATTGGTGGATATTGCAGTACAGGCTGTAAATTCATGTGACACAGAACAGCCTACAAATTGAACATAATGGATTTGATCGTTCGACTCCCTCAATTTGATAAGATCTTGTTTTTGGCTCAAAATCTAATGTTTATGCTAATTATTTACTAGTTATGTcttgaatgaatgtaaaacGAATATAAATGTTATTGTAAGATATTAGGCTTCCAATAAGTGCCGATAGAACTTTTACAGACTAACTGCATTGAAGATTAacctaaaatgttttgaaatcCCTAGATTTTCATATTTGTGGTTTAGGGCATTCCACCAATTTTACACCTCAAGACATTATTTttcatgattattattattattattgggtaTTTTTAaagcctttaaaaaaagttgtatgTCTTCTATGGCTGTCAAGTCTGTAACAACAACCCTAACCTGCTGTACAATGTTTGGAACTTGGAGTGTTTAAGACACTagtgagttgcattatgggaagtgtaggatccATCAGTTTTGgagcaaaaagaaaaagggtcAAAAATGCTTCTGGGGTATtgaatttttttcctttttttttgtttgtttcttccaAGTCCACCAACACAAAATTGTGGTTGACCTTAAAGTTTGAATATGCTGTAAAACTTGAATGTTATCAAAGCTCTGTTGGTAAAAATTGAATTGCAGGATCAGTGTGTTTATTATTAAATCCAAGGATGGAGTTATACATCG

Function

GO: NA

KEGG:

id description
K25204 XPO6, RANBP20; exportin-6

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207565 lncRNA downstream 70000 8895786 ~ 8903823 (-) False zgc:55558
TU207566 lncRNA downstream 70000 8895786 ~ 8903823 (-) False zgc:55558
TU207568 lncRNA downstream 70000 8895786 ~ 8903823 (-) False zgc:55558
TU207562 lncRNA downstream 75194 8895786 ~ 8898629 (-) False zgc:55558
TU207439 lncRNA downstream 253923 8718193 ~ 8719900 (-) False G153137
TU207647 lncRNA upstream 62926 9061296 ~ 9111224 (-) True G153274
TU207650 lncRNA upstream 62926 9061296 ~ 9101630 (-) False G153274
TU207653 lncRNA upstream 66626 9064996 ~ 9085687 (-) True G153275
TU207884 lncRNA upstream 188880 9187250 ~ 9194175 (-) False LOC120574599
TU207886 lncRNA upstream 188880 9187250 ~ 9204006 (-) False LOC120574599
XM_039824495.1 mRNA downstream 175 8969882 ~ 8973648 (-) True nme4
XM_039824496.1 mRNA downstream 568 8971080 ~ 8973255 (-) False nme4
XM_039824719.1 mRNA downstream 18537 8943059 ~ 8955286 (-) True slc6a16a
XM_039824720.1 mRNA downstream 31506 8924601 ~ 8942317 (-) True slc17a7a
XM_039823806.1 mRNA downstream 59319 8909947 ~ 8914504 (-) False LOC120573900
XM_039825593.1 mRNA upstream 510 8998880 ~ 9003151 (-) True antkmt
XM_039825594.1 mRNA upstream 510 8998880 ~ 9003148 (-) False antkmt
XM_039825591.1 mRNA upstream 4895 9003265 ~ 9010931 (-) False hirip3
XM_039825590.1 mRNA upstream 4895 9003265 ~ 9010931 (-) True hirip3
XM_039825761.1 mRNA upstream 12853 9011223 ~ 9018740 (-) True kctd13
TU207564 other downstream 66161 8904081 ~ 8907662 (-) False zgc:55558
TU207570 other downstream 69483 8895786 ~ 8904340 (-) False zgc:55558
TU207546 other downstream 116252 8853760 ~ 8857571 (-) False tufm
TU207545 other downstream 116866 8853760 ~ 8856957 (-) True tufm
unassigned_transcript_737 other upstream 191014 9189384 ~ 9190066 (-) True LOC120574343
unassigned_transcript_738 other upstream 193616 9191986 ~ 9192402 (-) True LOC120574654
unassigned_transcript_739 other upstream 195248 9193618 ~ 9194157 (-) True LOC120574599
unassigned_transcript_740 other upstream 222171 9220541 ~ 9221072 (-) True LOC120574348
TU207903 other upstream 222247 9220617 ~ 9221090 (-) False LOC120574348

Expression Profile