RNA id: unassigned_transcript_740


Basic Information

Item Value
RNA id unassigned_transcript_740
length 436
RNA type V_gene_segment
GC content 0.46
exon number 2
gene id LOC120574348
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 9220541 ~ 9221090 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

catcaacatgttctctgtagctctgatactgctgctggctgctggatCCTGTGTGAACAGTATTGATCTCATCCAGACAGACTCAATGGTTGTGCAGCCTGGACAGTCTCTGACCATCAGCTGTCAGGTCTCTGGTTATTCTTTGACTGATGACAGCTATGCAACAGGTTGGATCAGACAGAGTGAAGGAAAACCAATGGACTGGATTTCCCATCAGTGGGGTGGAGGTAGCCTTATTCAAAATAATGctctgaagaacaagttcagcTACAGCAGAGACACTTCTGCTCTAACAGTGACTCTAAAAGGACAGAATGTGCAGCCTGAGGACAcagctgtgtattactgtgtacGTTACCCCACAGTGATACAAACCACCAACAAACCTGCACAAATACCCAGCAACCAGCAAGactcaaccacacacactttgtAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207902 lncRNA downstream 638 9219599 ~ 9219903 (-) True G153462
TU207886 lncRNA downstream 16535 9187250 ~ 9204006 (-) False LOC120574599
TU207892 lncRNA downstream 16682 9196758 ~ 9203859 (-) True G153455
TU207884 lncRNA downstream 26366 9187250 ~ 9194175 (-) False LOC120574599
TU207647 lncRNA downstream 109317 9061296 ~ 9111224 (-) True G153274
TU207935 lncRNA upstream 25283 9246355 ~ 9337866 (-) False LOC120574352
TU207951 lncRNA upstream 27325 9248397 ~ 9303347 (-) True G153508
TU207940 lncRNA upstream 28757 9249829 ~ 9273114 (-) False LOC120574652
TU207952 lncRNA upstream 37138 9258210 ~ 9265367 (-) True G153509
TU207938 lncRNA upstream 67231 9288303 ~ 9715061 (-) True G153498
XM_039825003.1 mRNA downstream 172418 9043413 ~ 9048123 (-) True cabp5b
XM_039825617.1 mRNA downstream 183713 9020086 ~ 9036828 (-) False sez6l2
XM_039825615.1 mRNA downstream 183956 9020086 ~ 9036585 (-) True sez6l2
XM_039825761.1 mRNA downstream 201801 9011223 ~ 9018740 (-) True kctd13
XM_039825590.1 mRNA downstream 209610 9003265 ~ 9010931 (-) True hirip3
XM_039824654.1 mRNA upstream 122629 9343701 ~ 9345172 (-) True LOC120574364
XM_039824655.1 mRNA upstream 170493 9391565 ~ 9406804 (-) True LOC120574368
XM_039825001.1 mRNA upstream 476571 9697643 ~ 9739305 (-) True LOC120574579
XM_039824129.1 mRNA upstream 840214 10061286 ~ 10149481 (-) False cacna1aa
XM_039824126.1 mRNA upstream 840214 10061286 ~ 10149481 (-) False cacna1aa
unassigned_transcript_739 other downstream 26384 9193618 ~ 9194157 (-) True LOC120574599
unassigned_transcript_738 other downstream 28139 9191986 ~ 9192402 (-) True LOC120574654
unassigned_transcript_737 other downstream 30475 9189384 ~ 9190066 (-) True LOC120574343
TU207564 other downstream 312879 8904081 ~ 8907662 (-) False zgc:55558
TU207570 other downstream 316201 8895786 ~ 8904340 (-) False zgc:55558
unassigned_transcript_741 other upstream 508 9221580 ~ 9222078 (-) True LOC120574641
unassigned_transcript_742 other upstream 2953 9224025 ~ 9224455 (-) True LOC120574662
unassigned_transcript_743 other upstream 6194 9227266 ~ 9227715 (-) True LOC120574350
unassigned_transcript_744 other upstream 18337 9239409 ~ 9240018 (-) True LOC120574657
unassigned_transcript_745 other upstream 19758 9240830 ~ 9241342 (-) True LOC120574593

Expression Profile