RNA id: XM_039823807.1


Basic Information

Item Value
RNA id XM_039823807.1
length 3226
RNA type mRNA
GC content 0.41
exon number 4
gene id LOC120573900
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8909947 ~ 8914504 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GCTAGCCTTGTGAACATGCTCACTGAGGAGACTGAGGATTACACTTTGATGGTGATGGCCACTTCTCTGTCCAGAGAGTTCACTGATGGATGACTACGGCGAGATTAAATGGGACAGGGAAAGCTTCCTTGACGAGCTTGATGACTTATATTTGAACCACTCTGATGATGATTACAATTGTTGCAAGGGCGACCTAGAAGACGGCATGCATTTTGAGGCGATGTTCATCCCAGTTCTGTACTCTGTGGCATTTGTTGTGGGTGTCCTGGGTAACGGAGTGCTGCTGGGAGTTCTGGTTCAGAGCAGGAGGACCTGGAGTGTGACAGACATCTTCATTCTCCATCTGGGTGTGGCAGATGTCCTGCTGCTGGTGACGCTACCCCTCTGGGCTGCACAGTCCATTCAAGACAGAGGATGGACCTTTGGCACTCCTCTCTGTAAGATCACTGGAGCTGTTTTTACGATCAGCTTCTACTGTGGGATCTTTCTGCTGGTCTGCATCAGTCTGGACCGGTACCTGTCTATCGTCCACGCCACCCAGATGTATTCCCGCAGAAAGCCCTGGATCGTTCAGGTCAGCTGCTTGGCAGTGTGGCTCTTCTCCCTGCTCCTCTCGATCCCAGACTGGATCTTTTTGGACGCTGTGGTGGATGTAAGACGACAAAAAACAGAGTGCGTTTCCAACTACTTTGACTTCAACTCTGAGTCAGTAAATAACTGGAGACTGGCATCACGCCTGCTCTACCACACGGTGGGCTTCCTGCTGCCTTCAGCCATCCTGATCTTCTGCTACTCCTGCACCCTGCTTCGGCTGCGGTGCGGCTCCCAGGGCCTCCAAAAGCAGAAAGATTTTAAGGTCATTGTGGCCGTGGTGGTGGTTTTCTTTCTCTGCTGGACGCCATACAACATCACACTCATGGTGGACTCACTTCATTCCAACAACATCAGCAGGGACAGCGGAGTCAGAACATTTCTGGAGAAAGCCAAGATAGTCACCTCCTCCGTCGGTTACCTCCGCTGCAGCTTCAATCCCATCCTGTATGCCTTTGTGGGTGTGAAGTTCCGGCGTCAGCTCCTGGACATCCTGAGGTCTCTGGGCTGCAAGCTAAATTCTAatcaaccctaaccctaatgaaTCCCAATTCTCCCCCTTACCCCTTCCCCTTCGTCTTACCCCTAGCCCTTGTCCCCTGAATCAAGTGGCAAGGGCTAGGGGTGAAAACTTACCCCTATGAAATGGGACACCACTTGGTTACGGTTATGTCACCATACAGTATTGATCACAAACTTCCAAGATGCCGTCtacaagtgtgtgtatgtctattgcatgtatatattttatatagttATTTTATGTTCACTTTGGTGGTGCAGATGTTCTTATCTGTGTACTACTTAGATTTGTTagcaatacatatttttaaacacactgcatggggtgtgttgtatatctgtttcagttatcactgttttgaatgtcattgatgttcagaaacactttctTTGTTAATAAAGATATGTCTTTATTGCCCAATAAAGTaaacacaaaaggcaaaaacattatataaaaatgcATTGTTACAGAACCATTATCAACTATTAAAACCATAACttacatgtcacacacacatataaaaaggcactcaaatgtataaaactcAAAATCCAGTAACCTTTCACCCCTGTAtcataaccaacaacaatgtacaggtAGGCTACATGAACAGGTTTGCATTACAAATGATTACATTAATAcagtaccaatacaataatgaaTGGCTACAACATGAACGCATGACTCACTCCCATAGTTGCTTTGCAGCATATTTTGATTTTAGAAATTTCTGCTCGTTTTCAGCCTGAAAGTGGATCAGCTGTTGGGTTTCCTCCTGCatccctgtgtgatacaggacggtagCCTATATGTAAAGCATGTACCGATGTCTCCAAAGCAAGTAGTGTTATGCACTGATATCAAACGAAATTCGCTGCtaatggagtttagttaacaCTGTAGACATGCATGGATGCAGTTCTTTCAAGGCAGAGAAATGCGGGACTGTTGTGCAAATaagcaatgtaacgttaacgttatatgTTAGCGTTATAGGCTACGTTAGCGTTTAGCGCGTATTAGCAGCAGGTTTGATATTCGCAGGATATTCGTTGTCGACCTACCCCCAGTGTTCGAATTATCTTTTTGTCTTTAAGGGGGTCTCTCTATCTCATAAAAAAAGTTGGCACACCCCGCACATAGCCTAACAAGGCTATACATGAagacaatgacagctgcaaacttgtagcctattgcaacatttactcgtatacttttttttactcgTGTTCATTTCCCAACACCTTTTCGCGGTACATTTGTGTCGAGAATGTTTTACAAGGGCTGTCAATGAAGGAATGCTTGTGGCTCTCGTCATTTGGAGGATCACAGAGCCAGATGCCTAATTGTTTATCTGAGGCTATGATGGCTAAAAGTAGATATATAGAGAAAGTATATCTACGTTATAAAAAGTcaatcgaaaaaagtcataaaaaatcctagtatagtgtgttggaaaaaaaaagtgatgaaaaggtCATATAGTAGGcctaatcatgttaaataattgtgatttcaatattgaccaaaataatcgtgattaggATTTTTTCCATAGCTAATCAAGCCAATTAATTCCTCTCCCTATATAATTCTCAAAAGATGTAAGCAAAACAGATTAATATATAAGCAAAAACAGATTAATATGTAAGCAAAACAGATTAATATGTAGTCTAAGCAAGATGTTGTTTTGGGgggttttcaacacacacacactaagcaatgatatagtttgcttttcaaaacacagCTATCTAAGTGATTATATAGTTATCCTGTTAATACTGATAACgttatatatgttgtaaagcaaggaaTAATATGGATTctgctatttctttgttttggggttttcaatCCGACCTCGCGGTCAACAACATGGATTGTTCACAAACcaaaaaacatgttatttttttaatcataacCAGTGTGTTTTCAACATTGTTGCAACAGGACCCCTTAAAGGGCAATCCTGATATTATTTAGAGAATGTCTAAACATGTGAAAAAGATATACCTGGTAGAATAGAGAAGGCTTTGAAACTACTGTTAGCCCATGATGTAAATaagtaaaattaatttaaaaaaaattttttagaTAGCTAAAAGTTTT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207565 lncRNA downstream 6124 8895786 ~ 8903823 (-) False zgc:55558
TU207566 lncRNA downstream 6124 8895786 ~ 8903823 (-) False zgc:55558
TU207568 lncRNA downstream 6124 8895786 ~ 8903823 (-) False zgc:55558
TU207562 lncRNA downstream 11318 8895786 ~ 8898629 (-) False zgc:55558
TU207439 lncRNA downstream 190047 8718193 ~ 8719900 (-) False G153137
TU207647 lncRNA upstream 146792 9061296 ~ 9111224 (-) True G153274
TU207650 lncRNA upstream 146792 9061296 ~ 9101630 (-) False G153274
TU207653 lncRNA upstream 150492 9064996 ~ 9085687 (-) True G153275
TU207884 lncRNA upstream 272746 9187250 ~ 9194175 (-) False LOC120574599
TU207886 lncRNA upstream 272746 9187250 ~ 9204006 (-) False LOC120574599
XM_039823980.1 mRNA downstream 8716 8895782 ~ 8901231 (-) True zgc:55558
XM_039823975.1 mRNA downstream 28794 8866586 ~ 8881153 (-) False gys1
XM_039823977.1 mRNA downstream 28875 8866586 ~ 8881072 (-) True gys1
XM_039825141.1 mRNA downstream 47121 8861162 ~ 8862826 (-) True tmem86b
XM_039824633.1 mRNA downstream 53918 8850443 ~ 8856029 (-) False tufm
XM_039824720.1 mRNA upstream 10097 8924601 ~ 8942317 (-) True slc17a7a
XM_039824719.1 mRNA upstream 28555 8943059 ~ 8955286 (-) True slc6a16a
XM_039824495.1 mRNA upstream 55378 8969882 ~ 8973648 (-) True nme4
XM_039824496.1 mRNA upstream 56576 8971080 ~ 8973255 (-) False nme4
XM_039824494.1 mRNA upstream 59319 8973823 ~ 8998370 (-) True xpo6
TU207564 other downstream 2285 8904081 ~ 8907662 (-) False zgc:55558
TU207570 other downstream 5607 8895786 ~ 8904340 (-) False zgc:55558
TU207546 other downstream 52376 8853760 ~ 8857571 (-) False tufm
TU207545 other downstream 52990 8853760 ~ 8856957 (-) True tufm
unassigned_transcript_737 other upstream 274880 9189384 ~ 9190066 (-) True LOC120574343
unassigned_transcript_738 other upstream 277482 9191986 ~ 9192402 (-) True LOC120574654
unassigned_transcript_739 other upstream 279114 9193618 ~ 9194157 (-) True LOC120574599
unassigned_transcript_740 other upstream 306037 9220541 ~ 9221072 (-) True LOC120574348
TU207903 other upstream 306113 9220617 ~ 9221090 (-) False LOC120574348

Expression Profile