G152441 (LOC104944083,LOC103371237,LOC107087166,LOC105933549,LOC100701083,LOC101478422)


Basic Information

Item Value
gene id G152441
gene name LOC104944083,LOC103371237,LOC107087166,LOC105933549,LOC100701083,LOC101478422
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6182408 ~ 6228114 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU206520
GTGAGTCAGTGTTCTGGagtcgtttttattttttactcattttatttaattttttcacaGCTTgacctctttcttcttttggtATGTTTTACAACAACTCATTACCAGAGGATAAagggatggatagatagatggatggatggatggggtGATggtgtgagagggagagagggaggggggcgaATGCAGGAAGGGAAGAGTGCCGTGCAGAGGgaagagaaaacagaaaaaaagggagaaacaaATTGAGGAAGTGTTGGCTAAGACGGTGAAGTCAGAAATACAGAAGGACATTAGAGTCTTCCTCTTATAATCTCTATTTTTCTTTAACAATCTACTTGAAATGCTTTAAAATGTGAGGTTTATTCCTGCAGACATGTTTTATATCTATACATGAACAGAAAATAGAACAGTTTG
>TU206522
GTGAGTCAGTGTTCTGGagtcgtttttattttttactcattttatttaattttttcacaGCTTgacctctttcttcttttggtATGTTTTACAACAACTCATTACCAGAGGATAAagggatggatagatagatggatggatggatggggtGATggtgtgagagggagagagggaggggggcgaATGCAGGAAGGGAAGAGTGCCGTGCAGAGGgaagagaaaacagaaaaaaagggagaaacaaATTGAGGAAGTGTTGGCTAAGACGGTGAAGTCAGAAATACAGAAGGACATTAGAGTCTTCCTCTTATAATCTCTATTTTTCTTTAACAATCTACTTGAAATGCTTTAAAATGTGAGGTTTATTCCTGCAGACATGTTTTATATCTATACATGAACAGAAAATAGAACAGTTTGTATAAAAAGGATAAAATAAATCGTATGAATATAGGCGTGGGGACATttgaggaggtgtgtgtgtgtttgtgagggcGTGGCACACCACAGCTTACTTCCTAAAGTGCAGAATGGCACTTAGCAAAGACAGCGGTGGGGGAGTGGTTGAGAaaagaggagtgtgtgtgtagcaggaATCGGCTGCAGTCCGGTGGGCTGGGAGTCAGGGTGGGGCGGTGAGGTGTAGGCGCTGGGAAGGAAGGAGGGCCAGCAGGTGTCGGGATGTAGCGGTGGTTGTGAGGTGATCTTGGAGTGCTAGTCGGTCACACTAGGCGACTGTTTATTCCTTCACCAGGGAAGCAAACTCATCGACTCCAATCTTGCCGTCTCCATCCTTGTCGGCCGCTCTTAAAAATTCTTTGGTTTCCTTGTCTGTCAGGTCCCGGCCATCTTTGGCGAAACCTTTCAGGACGTATttgagctcctcctcctctatgaAGCCGCTGTTGTCGGCATCCAGCACTAAGAAGACCTTCTTTACTTCGTCAAAAGACTTGGCCTTCAGACCAACCATCTCGAAAAACTTCCTATGGTTAAAGGAGTCagcaaCTGCAAATGCATCAAGGGCTTTCTTGATGTCATCAGCGTTGAGGATGCTGCTCATTGCCATCTTGGCCTCCAGTGACAGGGTCTTCGTCCCGAGTGCTTCTGAATTCTCAGTAGTTGAAGGAAGAGCGGCGAGCTTCTGCCGGCTGGAGAGAAgtggaggacagaaagagagaaagagacagaaagagagagaaaacagataaAAGACAGGAGACAGCGGAGAGAGTAAGAGttatgaagagaaagagaaagtggacgagagcaggcgggcTGTGCGATCCAAGAAGAGGAGGCTGCTCCGGCTGGCTGGAGG
>TU206523
agagagaaagagagagGAAGAGCGGCGAGCTTCTGCCGGCTGGAGAGAAgtggaggacagaaagagagaaagagacagaaagagagagaaaacagataaAAGACAGGAGACAGCGGAGAGAGTAAGAGttatgaagagaaagagaaagtggacgagagcaggcgggcTGTGCGATCCAAGAAGAGGAGGCTGCTCCGGCTGGCTGGAGG

Function

NR:

description
PREDICTED: parvalbumin-7-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU206520 False 417 lncRNA 0.38 2 6226638 6228114
TU206522 True 1318 TUCP 0.47 5 6182408 6228114
TU206523 False 209 lncRNA 0.53 2 6182408 6209012

Neighbor

gene id symbol gene type direction distance location
csf2rb NA coding downstream 13384 6155299 ~ 6169024 (-)
si:dkey-110g7.8 LOC104967832,LOC102792586,LOC103358544,LOC102210840,LOC101475971,LOC105416417 coding downstream 100444 6073542 ~ 6081964 (-)
napsa ctsd,LOC107376365,LOC101168958 coding downstream 128631 6044198 ~ 6053777 (-)
mpst NA coding downstream 173809 6006526 ~ 6008599 (-)
LOC120574102 LOC103393291,LOC103147375,LOC102224681,LOC107672151,LOC105890774,LOC105029658,LOC101072687,LOC107583318 coding downstream 178408 5995852 ~ 6004000 (-)
baiap2l2a NA coding upstream 1249 6229363 ~ 6244419 (-)
ccdc97 NA coding upstream 117206 6345320 ~ 6350264 (-)
desi1a LOC102210395,LOC104922913,LOC103361812,LOC102293927,LOC100707393 coding upstream 348030 6576144 ~ 6585025 (-)
llgl1 llgl1,LOC102796592 coding upstream 379170 6607284 ~ 6649259 (-)
myo15aa myo15a,LOC102214943,LOC103147438 coding upstream 422715 6650829 ~ 6698387 (-)
G152422 NA non-coding downstream 27308 6154874 ~ 6155100 (-)
G152414 NA non-coding downstream 33596 6146825 ~ 6148812 (-)
G152406 NA non-coding downstream 61741 6120448 ~ 6120667 (-)
G152403 NA non-coding downstream 70473 6111732 ~ 6111935 (-)
G152400 NA non-coding downstream 72466 6109739 ~ 6109942 (-)
G152462 NA non-coding upstream 84698 6312812 ~ 6313399 (-)
G152473 NA non-coding upstream 110559 6338673 ~ 6339107 (-)
G152492 NA non-coding upstream 130955 6359069 ~ 6359288 (-)
G152494 NA non-coding upstream 149845 6377959 ~ 6378253 (-)
G152495 NA non-coding upstream 152761 6380875 ~ 6381191 (-)
LOC120574101 NA other downstream 187219 5991937 ~ 5995189 (-)
atp5mf atp5j2,LOC102786280 other downstream 568686 5574680 ~ 5613722 (-)
bud31 bud31,LOC106595689 other downstream 599544 5580263 ~ 5582864 (-)
top3a top3a,LOC102783137 other downstream 614869 5549291 ~ 5567539 (-)
G152114 rbx1 other downstream 717990 5461846 ~ 5464418 (-)
G152567 NA other upstream 491670 6719784 ~ 6720643 (-)
arhgdig NA other upstream 544766 6772880 ~ 6801536 (-)
grin2aa grin2a,LOC102780805 other upstream 1341604 7569718 ~ 7723914 (-)
LOC120574885 LOC103375378,LOC104925605,LOC104966930 other upstream 1854024 8082138 ~ 8100398 (-)
G152952 NA other upstream 2213065 8441179 ~ 8444381 (-)

Expression


Co-expression Network