napsa (ctsd,LOC107376365,LOC101168958)


Basic Information

Item Value
gene id napsa
gene name ctsd,LOC107376365,LOC101168958
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 6044198 ~ 6053777 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039826320.1
ACCGAGTAAATCCGGACATTGCCGAATCGCTTTCTGCGTCAGTTGAAATAGTGGTCTGTGCGCTCGTTAGTTGCGGAAACAATTCCAAAGtgtgagttattttttttacgagGACAGAAATGACACAGCTAACGGGTTTTTGTATCATCGGGGCGCTGCTGATAACACAAAGCGCCGCCATCTTCAGAGTTCCCCTTCATAAAACCAGAAGCCTACGCCGCCTGATGAGCGACAATGGGATGTCTCTGGAGGAGCTTCAGGCTTTAGCGAGGAGCACCGGAGCACCGGACAGCTCTCCCTCCCCCAAAGTGCCCGTAGAGAGGCTGACCAACTTCATGGATGCCCAGTACTATGGGATGATCAGCATTGGCACCCCTCCACAGGACTTCACTGTGCTGTTTGACACCGGCTCCTCCAACCTCTGGGTCCCCTCCATTCACTGCTCCTTCTTCGATGTGGCCTGCTGGCTTCATCATCGCTACAACTCGAAGAAGTCGAGCACATTCGTCCAGAATGGCACACAGTTTTCCATCCGGTACGGCAGAGGCAGTTTGTCTGGCTACATCAGCGGCGACACCGTCTCTGTTGCAGGTCTGCCTGTTCCTGGCCAGCAGTTTGGTGAAGCGGTGAAGCAGCCTGGCATCACATTTGCAGTGGCACGGTTCGATGGGGTCTTGGGCATGGCCTACCCCTCCATATCAGTAGCTAATGTCACCCCGGTGTTTGACACGGCCATGGCTGCCAAGCTGCTGCCCCAGAATATTTTCTCTTTCTACATAAGCAGAGACCCCAAAGCAGCGGTAGGAGGAGAGCTGATGCTGGGTGGGACAGACCCCCAGTACTACACCGGAGACCTGCACTATGTCAATGTCACACGAAAGGCCTACTGGCAGATCACGATGAGCGGAGTTGATGTTGGCAACCAGCTGACTCTCTGCAAGGCCGGTTGCCAGGCTATTGTCGACACGGGAACGTCCTTGATTGTCGGTCCTGTGGAGGAAATCAGAGCGCTGCACAAAGCCATCGGAGCTCTGCCCCTGCTGATGGGAGAGTACTTGATTGACTGCAAGAGGATCCCATCCCTCCCCGCCATCTCCTTCAACATTGGAGGCAAGACGTTTAACCTGACGGGAGAGGATTATGTCTTGCAGGAGTCTCAGCTGGGTAGATCAATCTGTCTGTCAGGCTTCATGGCCATGGATATCCCACCTCCCGCAGGGCCCCTGTGGATCCTGGGAGATGTATTCATCGGGAGGTACTACACGGTGTTCGACAGAAACGCCGATCGTGTGGGGTTTGCCTCCGCCAAGTAGATTACCGAACTCTGTTTGTGTGAAATATGTTGCACTGTTCTAATGGTTTTTTTACTTTCATGTCACACCAAGCCAAGCTTACTTTCATCATCACCGTTGCGTTATTTAATTCGCAGCAATCAAAAGCATTTAATGGTTGTTGTACATCACTGCAAGACCTGGCTTGCCACATAAATATCTCACTTAGAATGTTTTTATGAGAAAGTGGCTGATGATGAGCAAGTGTGGATGCTATATTAATAGTTGAGATGTTTTGTGTCACTCAACAAAGGCACTGATGCACTCAGTTTCTTGCATTTGTCTGTGAAGCTGCTTTCAGTTTAGGCTTCCCCTTTTGATATGACAGGATTCAATCAGAGCTATGCATTTTAAAGTGTTTGTGCCATTTTAATTTTTGTAATGGTTGGGAAcaaatgcaactttttgttgttgttgatgtaaTCATTTCTAACAACTGACCCACATTTCCAGCTCTCAATGTATCTCAGCATGCTTCTCTTAATATGCCTTTGTGTTATCAAAACTCCCTGAAGAAagctttaaatatttgttttcaaattttGAATGGATGGGTTTAGATTGTGATCCGCCATTGAGTGTAAAATAAGTTTTTCACACTGCTCCCttgggaaaacaaacaaaataaacctACAGAATGTTATTTGTAACATTTAATGAAGTATACAAAGTGCTGCAATGTCTATCTCCACTGCAAAAATACACAGCATGCAACAAAGCATATGGCTAGTATGAACTCCACAATGTAGAGGTAGTGATCTACTTTGGGTCTTTGTTTTACAATAACATTACAAAGGTGGCACAGTGACTTCCCTTCCTTCAGAACAGCAGTCATCGGTGGCATAAAGTAGGCCTGCAAAGTAAGACTTAATATGCAAACAAAAGATCTACTGTGGTTTCATTTTTATATCTGTACATCCAGGACTTAAGCACAATAAGTGGTACTTTACACGTTGAATGGAACGGAAATAAATAGTCTGCTCTTTTTTTGGTTACAAatgtacaataaatacaaaaatattca

Function

symbol description
ctsd Predicted to enable aspartic-type endopeptidase activity. Acts upstream of or within muscle structure development; response to bacterium; and retinal pigment epithelium development. Predicted to be active in lysosome. Is expressed in several structures, including eye; liver; muscle; pleuroperitoneal region; and unfertilized egg. Human ortholog(s) of this gene implicated in Alzheimer's disease; breast cancer; and neuronal ceroid lipofuscinosis 10. Orthologous to human CTSD (cathepsin D).

NR:

description
PREDICTED: cathepsin D-like

GO:

id name namespace
GO:0006508 proteolysis biological_process
GO:0004190 aspartic-type endopeptidase activity molecular_function

KEGG:

id description
K01379 CTSD; cathepsin D

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039826320.1 True 2355 mRNA 0.46 9 6044198 6053777

Neighbor

gene id symbol gene type direction distance location
mpst NA coding downstream 35599 6006526 ~ 6008599 (-)
LOC120574102 LOC103393291,LOC103147375,LOC102224681,LOC107672151,LOC105890774,LOC105029658,LOC101072687,LOC107583318 coding downstream 40198 5995852 ~ 6004000 (-)
il2rb NA coding downstream 57291 5976548 ~ 5986907 (-)
c1qtnf6a LOC101473735,LOC102300081,LOC102790480,LOC100705049 coding downstream 77015 5959192 ~ 5967183 (-)
ap5z1 ap5z1 coding downstream 127242 5904938 ~ 5916956 (-)
si:dkey-110g7.8 LOC104967832,LOC102792586,LOC103358544,LOC102210840,LOC101475971,LOC105416417 coding upstream 19765 6073542 ~ 6081964 (-)
csf2rb NA coding upstream 101522 6155299 ~ 6169024 (-)
baiap2l2a NA coding upstream 175586 6229363 ~ 6244419 (-)
ccdc97 NA coding upstream 291543 6345320 ~ 6350264 (-)
desi1a LOC102210395,LOC104922913,LOC103361812,LOC102293927,LOC100707393 coding upstream 522367 6576144 ~ 6585025 (-)
G152362 NA non-coding downstream 33347 6009247 ~ 6010851 (-)
G152330 NA non-coding downstream 94703 5949277 ~ 5949495 (-)
G152329 NA non-coding downstream 95179 5948814 ~ 5949019 (-)
G152302 NA non-coding downstream 169890 5873777 ~ 5874308 (-)
G152298 NA non-coding downstream 252023 5791967 ~ 5792175 (-)
G152400 NA non-coding upstream 55962 6109739 ~ 6109942 (-)
G152403 NA non-coding upstream 57955 6111732 ~ 6111935 (-)
G152406 NA non-coding upstream 66671 6120448 ~ 6120667 (-)
G152414 NA non-coding upstream 93048 6146825 ~ 6148812 (-)
G152422 NA non-coding upstream 101097 6154874 ~ 6155100 (-)
LOC120574101 NA other downstream 49009 5991937 ~ 5995189 (-)
atp5mf atp5j2,LOC102786280 other downstream 430476 5574680 ~ 5613722 (-)
bud31 bud31,LOC106595689 other downstream 461334 5580263 ~ 5582864 (-)
top3a top3a,LOC102783137 other downstream 476659 5549291 ~ 5567539 (-)
G152114 rbx1 other downstream 579780 5461846 ~ 5464418 (-)
G152441 LOC104944083,LOC103371237,LOC107087166,LOC105933549,LOC100701083,LOC101478422 other upstream 128631 6182408 ~ 6228114 (-)
G152567 NA other upstream 666007 6719784 ~ 6720643 (-)
arhgdig NA other upstream 719103 6772880 ~ 6801536 (-)
grin2aa grin2a,LOC102780805 other upstream 1515941 7569718 ~ 7723914 (-)
LOC120574885 LOC103375378,LOC104925605,LOC104966930 other upstream 2028361 8082138 ~ 8100398 (-)

Expression


Co-expression Network