top3a (top3a,LOC102783137)


Basic Information

Item Value
gene id top3a
gene name top3a,LOC102783137
gene type misc
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 5549291 ~ 5567539 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU206270
aggatcCTCGTCCACCAGCTCCAAGGCCCCCCGGACCAGAGCCACCCAGACCCCGGGGTTCAAATTCTCGAACTTGCCTTCCTCCTGCCCCCTCCTGGACCCCGCAGCCACAACCTCCGGCAGGCGGCAGCGCTCCCAGCGTAGATGACGATGTCATTGTGTGTAACTGTGGTCAGGATGCGCTCCTCCTGACCGTGCGCAAAGACGGCCCCAACCAAGGCCGTCAGTTCTACAAGTGCAACGCGGGGGGCTGCAACTTCTTCCTGTGGGCGGACCAGCCGAGTCAGCAGGGGGAGCCGCAGGGTCGAGGGCCTCCGCAGGGTCGAGGGCCTCCGCAGGGTCGAGGGCCTCCGCTGCAAGCGCCGCCGAGGCCCCCTCTGGGGTTCAGGACTACCCCTGGAGCAGGCAGAGGGCAAGAAGGGGGTGCAGGAGAACACACGGGACCGACAATGTGTAACTGTAACGAGACAGCGGTGACGCGAACGGTGCAGAAGGACGGTCCAAACAAGGGCCGGATGTTCCACACCTGCGGGAAACCAAGAGAGCAGCAGTGTGGCTTCTTCCAGTGGGCTGATGAGAACGAACCGCCACCAGTTGGCTTCGGTGGTGGATTTAATGGCGGTGGAGACggagggaggaaggggaggaagaTCACGGGAGGTGCCACCGCTAACAAGCCTGCAGCTGCTAAGAAACCTCGTACCTGTGGCATCTGCCACAATCCGGGACACACCCGAGTCACCTGTCCCCAGCGGTGACCGCTGCTTAGAGACTCTTAACGTGGAGTTACTGAAGTCTCTGACTTCAAAGTGTGGAGTCAGATATGCAGCAAAACAGATTGTACGTACCTCCTCCCAGGAGATGGACCTCTTCCTCTGGTATGTAGGAATTCCAAGAGGGCAAAAACCGCTTCGAGCACCAGACCAAAGGCATGTCATGACTAAGGCTAAAAACATGTAGTTTATCAGGTCAATAGAAACTAGACCTTTCCCTTCTCTTTTCATCCAGCTCTATTTTCTCAGGTCTCCTCAGATCCTCAATGTGTTTTTTCTCCGAGAAGAATGGCTCTTTTCTGGCCCCTGGGGAGGAAAAGTTAGGGCTCATTTTGGGGTCAGGTAAAACTTTGAGAAtcaacattttaggaaatacgcttatttgctctcttgccaagagttaggtGAGATTGTTTGTTACCGCAGAAACCTGAAGATGCTCAACTGTTAATGGGAAATTTGCTCAGCTGGTCAAAaaaaacaccatcgagcaatAAATCCTCCGTCTAGTGTGTTTATTCCCAATCCTGACAGCTTGCCTCAGATCAGTTTAAGGAGGGTGATTCTGGCACAAATTGAATACATgtgtattttaaagaaaacatgtgCACACAGTTTCTTAATAATTAATAGTGTaattaatgtgtttattaacATGTTTACTACAGGTTCATCAGTGTTGCCATCACTAAGTATCTGAAACAAGAGCCAAGTATTTTACATTTGTTGATTCTTCaaggtggttgttgttggaagaaaccacaaaatatatttttacattgtgaATATGTAGGCAAAAATACTCGTACTCTCTCTCCAGTCTGAGGAAGTGTCCGTACCAAGATGTACTATTTTAATATTGATGA
>XM_039825595.1
TTACGGCAGTATTTGACAGGCGAGCGCGGAATTTGTaaacagagctaacgttagcagtcaaGAGGTCGATGTTGCTCCTCATAAGTTTTAAATTAGTAATTTTAGATGGGCTGGAATTATTTTGTCTCATTTAATTACTCGGGAATGAAGATGGACAACTGGTGGCcacacagaggagagacagcAGCAGTGAGGCCGCCTCGCTGCTTCATGTAAGAGCTGCCCGGCATGCTAGCTCACCTCCTCGGCAGATCTTTGCTTCGATCGGGTCTGACGTTACAGCGGCTGGGGGTCCCGCGGAGTTGTTTCTGTGCGGCGCAGAGTGGCCGGTGTCCGGACACACCGCAGCAGCAGGCAGACATGATCCGGGGCCGGGCTCAGATCAAGCGGGTCCTCTGCGTAGCCGAGAAGAACGATGCAGCCAAAGGCATCGCAGAGATAATGTCCAACGGCAGGTCCAGGAGGAGAGAGGGGATGTCAAGGTTTAATAAAATCTATGAGTATGAATATCATCTCTTTGGTCAGGATGTGACGGTAACAATGACGTCAGTATCGGGCCATTTACTGGGTTTGGAGTTCACTGCACAGTACCGGAAATGGCACAGTTGCAACCCAGTGCTGTTATTTGATGCCGAGGTACAGAAGTGCTGTccagaaaacatgaaacaaatCAAGCGAACACTAGAGAAAGAGGTGAGACAGTGCCAGGTCTTAGTCATCTGGACTGATTGTGACCGAGAGGGAGAAAACATTGGCTTTGAAGTCATAGATGTCTGCAGATCAGTGAAGCATAATTTACAAGTCTTTCGGGCAAAGTTTTCTGAGATCACCCCCAACTCCATTCGGAGAGCTTGTGAGACTCTAATAGAGCCAGATGCCAACATCAGCGATGCTGTCGATGTCCGTCAGGAGCTGGACCTGCGAATAGGTGCGTCCTTCACTCGATTCCAAACGCTTCGCCTGCAGAAGATCTTTCCAGAGTCTTTGGCCAATCAGCTGATCTCATAcggcagttgtcagtttcccacTCTGGGCTTTGTTGTGGAGCGCTTCAAAGCCATCCAGGCTTTCATACCCGAGACTTTCTACAAGATCAAAGtGCTGCACGAGGTGGGGGAGGACAATGTAGAGTTCAGCTGGAAAAGAAACCGTCTCTTCAACCACACAGCATGCCTGGTGCTCTACCAGATCTGCATGGAGAATCCCATAGCAACAGTCACCTCAGTAACCAGCAAACCCAAGAGCAAGTGGAGACCGCTGCCTTTGGACACTGTGGAACTGGAGAAACTTGCATCTCGGAAGCTAAAAATAAATGCCAAAGAGACCatgaaaattgcagaaaaactGTATACCCAAGGGTATATCAGCTACCCCCGTACAGAGACAAACATTTTTCCCGAAAACCTGCCTCTCGGCCCCCTGGTGGAGCAACAGACACAAAGCCCGATCTGGGGGACGTTTGCCCAGAGAGTGATGGAACAGCCGGGGGGTCCCAACCCACGACAGGGCAAGAAATCTGACCAAGCCCATCCCCCGATACACCCCACCAAGTACTCCAATACACTGCAGGGCAACGAGGGACGTGTGTATGAGTTCATTGTCCGGCACTTCCTGGCTTGCGTATCCCAGGATGCTTTGGGGCATGAGACTGTGGTGGACATAGACATCGCCCAGGAGAACTTCTCCTCCTCGGGACTCATGATCATTGCAAGGAACTACTTGGACATTTACCCGTATGACAGGTGGAGTGCCAagGTGATCCCAGTGTATGAGCAAGGCTCCCAGTTCCAGCCCTCTGCTATCGAGATGGTGGATGGACAAACGAGTCCTCCGCAGCTGCTCACTGAAGCCGACCTCATATCCCTGATGGAGAAACACGGCATTGGCACAGATGCAACCCATGCAGATCACATCGAGACCATAAAGAGTCGCATGTATGTGGGCTTAACAGCTGACCAGAGGTTTCTGCCTGGAGAGCTCGGCATGGGACTGGTGGAggGTTACAACTCCATGGGCTATGAGATGTCCAAACCAAACCTGCGTGCTGAATTGGAGGCGGACCTCAAGCTGGTATCAGAGGGCAGGAAGGACAAACACACGGTGCTGCAGCACCACATCCAGAAATACAAGACCGTCTTCATTGAGTCTGTCAGGAAGGCGAAGAAGTTGGATGAAGCCCTGTCGCCATATCTGGGTGCAGCTCAGGAAGTGGCTGAAGCACAGCAGCAGGACATGGAGTTCCCGCTGCCGGTCAGGAAGTGCCCTCAATGCGGACAGGACATGGTgctgaggaagaagagggagggaAACAGtaagtTCCTGTCCTGCACAGGCTACCCAGCCTGTAAGTCAGCAGTGTGGTTCCCCGACACGGTGCTGGAGGTGAGCAGAGACGACAGCATTTGTCCCACCTGTCTGCCGCACCCTGTTCACATGTTGAAGTTCAAGTTCCGCAGGGGCAGCCTCCCTCCCACGATGCCTTTAGAATTTGTCGGCTGCATCGGTGGATGTGACGACACGCTCAGAGAAGTGCTGAACCTGAAGTACCTCCGAGCAGGCGGAGCAGGAGGggaaggtggaggaggagggggaggaggagggggaggaggaggagaggatcCTCGTCCACCAGCTCCAAGGCCCCCCGGACCAGAGCCACCCAGACCCCGGGGTTCAAATTCTCGAACTTGCCTTCCTCCTGCCCCCTCCTGGACCCCGCAGCCACAACCTCCGGCAGGCGGCAGCGCTCCCAGCGTAGATGACGATGTCATTGTGTGTAACTGTGGTCAGGATGCGCTCCTCCTGACCGTGCGCAAAGACGGCCCCAACCAAGGCCGTCAGTTCTACAAGTGCAACGCGGGGGGCTGCAACTTCTTCCTGTGGGCGGACCAGCCGAGTCAGCAGGGGGAGCCGCAGGGTCGAGGGCCTCCGCAGGGTCGAGGGCCTCCGCAGGGTCGAGGGCCTCCGCTGCAAGCGCCGCCGAGGCCCCCTCTGGGGTTCAGGACTACCCCTGGAGCAGGCAGAGGGCAAGAAGGGGGTGCAGGAGAACACACGGGACCGACAATGTGTAACTGTAACGAGACAGCGGTGACGCGAACGGTGCAGAAGGACGGTCCAAACAAGGGCCGGATGTTCCACACCTGCGGGAAACCAAGAGAGCAGCAGTGTGGCTTCTTCCAGTGGGCTGATGAGAACGAACCGCCACCAGTTGGCTTCGGTGGTGGATTTAATGGCGGTGGAGACggagggaggaaggggaggaagaTCACGGGAGGTGCCACCGCTAACAAGCCTGCAGCTGCTAAGAAACCTCGTACCTGTGGCATCTGCCACAATCCGGGACACACCCGAGTCACCTGTCCCCAGCGGTGACCGCTGCTTAGAGACTCTTAACGTGGAGTTACTGAAGTCTCTGACTTCAAAGTGTGGAGTCAGATATGCAGCAAAACAGATTGTACGTACCTCCTCCCAGGAGATGGACCTCTTCCTCTGGTATGTAGGAATTCCAAGAGGGCAAAAACCGCTTCGAGCACCAGACCAAAGGCATGTCATGACTAAGGCTAAAAACATGTAGTTTATCAGGTCAATAGAAACTAGACCTTTCCCTTCTCTTTTCATCCAGCTCTATTTTCTCAGGTCTCCTCAGATCCTCAATGTGTTTTTTCTCCGAGAAGAATGGCTCTTTTCTGGCCCCTGGGGAGGAAAAGTTAGGGCTCATTTTGGGGTCAGGTAAAACTTTGAGAAtcaacattttaggaaatacgcttatttgctctcttgccaagagttaggtGAGATTGTTTGTTACCGCAGAAACCTGAAGATGCTCAACTGTTAATGGGAAATTTGCTCAGCTGGTCAAATAAATctgtttatcggtgttttttgcccccaacggctccttgcaggcagcgctgcctgcactaggattaggcactggttatggttagggttaggtttttGGGTTAAAATGTAACAcctggggttagggttaggtgccttggaggcagtggtcgcagcgctgcctggagggagccgttgggggcaaaaaacaccatcgagcaatAAATCCTCCGTCTAGTGTGTTTATTCCCAATCCTGACAGCTTGCCTCAGATCAGTTTAAGGAGGGTGATTCTGGCACAAATTGAATACATgtgtattttaaagaaaacatgtgCACACAGTTTCTTAATAATTAATAGTGTaattaatgtgtttattaacATGTTTACTACAGGTTCATCAGTGTTGCCATCACTAAGTATCTGAAACAAGAGCCAAGTATTTTACATTTGTTGATTCTTCaaggtggttgttgttggaagaaaccacaaaatatatttttacattgtgaATATGTAGGCAAAAATACTCGTACTCTCTCTCCAGTCTGAGGAAGTGTCCGTACCAAGATGTACTATTTTAATATTGATGACTGCTAATAAACATAAATGTATGGTAA

Function

symbol description
top3a Predicted to enable DNA topoisomerase activity. Predicted to be involved in DNA topological change. Predicted to be located in chromosome. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in autosomal recessive progressive external ophthalmoplegia with mitochondrial DNA deletions 5. Orthologous to human TOP3A (DNA topoisomerase III alpha).

NR:

description
PREDICTED: DNA topoisomerase 3-alpha isoform X1

GO:

id name namespace
GO:0006265 DNA topological change biological_process
GO:0005694 chromosome cellular_component
GO:0003917 DNA topoisomerase type I (single strand cut, ATP-independent) activity molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K03165 TOP3; DNA topoisomerase III

RNA

RNA id representative length rna type GC content exon number start site end site
TU206270 False 1639 TUCP 0.51 3 5549318 5554250
XM_039825595.1 True 4464 mRNA 0.52 20 5549291 5567539

Neighbor

gene id symbol gene type direction distance location
cbx7a NA coding downstream 8090 5533856 ~ 5541201 (-)
st13 st13 coding downstream 70624 5466251 ~ 5478667 (-)
LOC120575348 NA coding downstream 111928 5416137 ~ 5437363 (-)
tefb LOC106601241,LOC106607162,LOC107091051 coding downstream 135312 5399023 ~ 5413979 (-)
LOC120574211 aco2,LOC103370792,LOC105918004 coding downstream 164447 5367065 ~ 5384844 (-)
tnrc18 tnrc18 coding upstream 94322 5661861 ~ 5717548 (-)
actb2 actb,LOC102799139 coding upstream 158347 5725886 ~ 5730322 (-)
rnf216 rnf216,LOC107591749,LOC106595856 coding upstream 226568 5794107 ~ 5818120 (-)
smurf1 smurf1,LOC102787679,LOC103393300 coding upstream 254087 5821626 ~ 5840646 (-)
wipi2 wipi2 coding upstream 307203 5874742 ~ 5881666 (-)
G152233 ep300 non-coding downstream 39899 5508717 ~ 5509392 (-)
G152107 NA non-coding downstream 101234 5446503 ~ 5448057 (-)
G152104 tob2 non-coding downstream 154176 5390505 ~ 5395115 (-)
G152081 NA non-coding downstream 258930 5287858 ~ 5290361 (-)
G152052 NA non-coding downstream 378639 5170304 ~ 5170652 (-)
G152249 pdap1,LOC102785718 non-coding upstream 15840 5583379 ~ 5587735 (-)
G152256 NA non-coding upstream 33774 5601313 ~ 5606088 (-)
G152270 NA non-coding upstream 92547 5660086 ~ 5660898 (-)
G152280 NA non-coding upstream 170392 5737931 ~ 5783361 (-)
G152298 NA non-coding upstream 224428 5791967 ~ 5792175 (-)
G152114 rbx1 other downstream 84873 5461846 ~ 5464418 (-)
G152043 cdc42ep1,LOC102301584,LOC102206375,LOC102078793 other downstream 322050 5178316 ~ 5227241 (-)
LOC120574081 grin2b,fmc1,LOC102794452,LOC102794917 other downstream 783798 4585173 ~ 4765493 (-)
LOC120575466 LOC102292836,LOC101471904,LOC100692969,LOC103393382,LOC103468414,LOC102212070,LOC103143659,LOC102784177 other downstream 1084300 4416177 ~ 4464991 (-)
LOC120575464 NA other downstream 1181948 4361848 ~ 4367343 (-)
atp5mf atp5j2,LOC102786280 other upstream 7141 5574680 ~ 5613722 (-)
bud31 bud31,LOC106595689 other upstream 12724 5580263 ~ 5582864 (-)
LOC120574101 NA other upstream 424398 5991937 ~ 5995189 (-)
G152441 LOC104944083,LOC103371237,LOC107087166,LOC105933549,LOC100701083,LOC101478422 other upstream 614869 6182408 ~ 6228114 (-)
G152567 NA other upstream 1152245 6719784 ~ 6720643 (-)

Expression


Co-expression Network