RNA id: XM_039824549.1


Basic Information

Item Value
RNA id XM_039824549.1
length 1997
RNA type mRNA
GC content 0.45
exon number 5
gene id jpt2
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8772864 ~ 8778762 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCACCACGGAGTTTTGCTGGGCATGCGCAAACAGGAGGAACTTTCTCCAGTCCAGTTGGCAAACTGACGAAGTTGTCTTCGGAAACTTGAAGGCTCAAAACCCACTATGACTTCGACAAACATGTTTCAAGGGTTGGATACTGGTACAAAACCAAGTTCAAGGGTGTTGCAGCCTCCTGGAGGTGGCTCCAGTAACCTGTTTGGTGGATATGAAGATGACTCTGCAGCATCAAGAAGACCTAATAAGATGGCCTCTAAAGTTTTTGCTCCAGCAGAGGAGTCCCAGTGTGTACCCAAACGCTCCAATCCTCCAGGTCAGACCAGCTTGTCGGGGCTTGATGTGCAGAGGCAGGCCAGTAAAAAACAGGGTGGGAAGACTAGCGGAATATTTGGGGAACCTGAACCTCCAGCTCGGCAACAGAGACCCAAACCTCCTGGTGGACCATCCAGCAACATATTCGGTGCTGCGGAGAGTGCACCTGCTCAAAGCCAGAACCGAAGCCACCCAAATAAGCCAAAGgaCAATCTAAGTGTGGGACCTGAATCATCACCATCACTTGAAGCCAAGGTCAGCCAACCTGAAGGGAAGGTGGAAGCTGCCCCCCCAGCTCCCATGCCAGCCAAAGAAGAGCCTGCTGTTGTCTCGGCCCCTCAAGAGCCTGAGCCCAAGCCCCAGtccccttctttctcttcttcaccTCCTGTTGAGAAAGAGGTGACTGGTGAGCTGAAGAACCACGAGCCTCATCTTGGACCCAAGCCTCGCTCTCACAACAGGGTTCTCAACCCCCCTGGAGGAAAGTCTAGTGTGGTATTCTACTGATCAGCTGAACGCACCTCTACTCTTGTTTGTGTCCATACGCGCCTTGTCTGCTCCCCTGTTAATCTTCTTTCATTCCAACACCCCACGGTTATTTCACCTGTACATCTAAACACAGAGCAGGATTTTTTGTTCTTCTCACCAGATTCCTATTCAAATATGTTGTCCTCAACTTCATGCACTTTGAGCCCTATTTCTGGTTTCCAGCTCTTTGTCCAATTCGTCATATTGTCCTTCAATGAAACCTGCGATCATTCAATCACCAATCAACAGGCTCGCTATTACCTAATCACTTTAACTGTGACACTATCAATCTCAGTATTGTGGTTACTAATTTCACCGTTTGTTTGTAGATGTAGTTTGGTTTAAGGCACAGTTTGTCATTTTGAAAACGTTTTTGCATCTCAAGTGTGGTTAAGACATCCGAGTGCTTGTACAATGTTCAGCTTTAAACAGTGATTGATGTGAAACGAAAATCCTTGAGTAAAAAAATCAGACATTTGCTCAAATTTCAAGGTGCTCATTTTAAATCCTTAATGTGTCGGCCTTCAATCAGAAGGGGGTGAATAGATCTTCTCACCAATGTATAATGTTTCAGGGAGTTCCACTAGTGCCACCTTTTATGTTGCTGGATCCTGATTGGATGACTACATAAAACCTGTCAATTTTACTAAATAATAGTGTTGAACTCCTCATGAATTATCCCTTCATTTCAACGTGTCCAACATTCATGATCTGCTTTCAGAACTCAAAGTCTGTTAAAGGATAGATGCCAAAAATTTACTTTGAAACAAAGATGAATGCAATTGTTGACTCCCAAATGTTTCTGCTTCCTTAAAGAAAATTCCATTTTGATTGTATGCGGATGTATTGTGCAGGTACTTCTCTGCTTTGTCGTCATTGCTTGCTTTATCTGAGAACATGCCTTTTTTGCTTGGGGTAGGCCtctgtttatgttttaaattaaaacgGCTGAAGATAAGTGAACTCTGGACCAGCGCGTGGCCTACCTGAGTCCAGGTGGGCTCATTGATAATCACCTTTTCACTCACTTCACGATGCACATTCATGGTATTCTGGTGCCAGCCTGTCCCCAGTGTGTTGATGTGCCTGGCAGGCAATGAGCACAGCAGAAGAAGATCCTGTGTATTGCAATAAAACTGTTTTGCATTTAAA

Function

GO:

id name namespace
GO:0090304 nucleic acid metabolic process biological_process

KEGG:

id description
ko00240 Pyrimidine metabolism
ko03013 Nucleocytoplasmic transport
ko03030 DNA replication
ko04111 Cell cycle - yeast

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207437 lncRNA downstream 52964 8700109 ~ 8719900 (-) False G153137
TU207438 lncRNA downstream 52964 8700109 ~ 8719900 (-) True G153137
TU207435 lncRNA downstream 52964 8718193 ~ 8719900 (-) False G153137
TU207439 lncRNA downstream 52964 8718193 ~ 8719900 (-) False G153137
TU207433 lncRNA downstream 71076 8700109 ~ 8701788 (-) False G153137
TU207562 lncRNA upstream 117024 8895786 ~ 8898629 (-) False zgc:55558
TU207565 lncRNA upstream 117024 8895786 ~ 8903823 (-) False zgc:55558
TU207566 lncRNA upstream 117024 8895786 ~ 8903823 (-) False zgc:55558
TU207568 lncRNA upstream 117024 8895786 ~ 8903823 (-) False zgc:55558
TU207647 lncRNA upstream 282534 9061296 ~ 9111224 (-) True G153274
XM_039824521.1 mRNA downstream 4164 8739631 ~ 8768700 (-) True mapk8ip3
XM_039824533.1 mRNA downstream 4166 8739631 ~ 8768698 (-) False mapk8ip3
XM_039824541.1 mRNA downstream 4166 8739631 ~ 8768698 (-) False mapk8ip3
XM_039824540.1 mRNA downstream 4166 8739631 ~ 8768698 (-) False mapk8ip3
XM_039824525.1 mRNA downstream 4166 8739631 ~ 8768698 (-) False mapk8ip3
XM_039824551.1 mRNA upstream 20713 8799475 ~ 8805852 (-) True dhrs7b
XM_039824554.1 mRNA upstream 28472 8807234 ~ 8810350 (-) False tmem11
XM_039824553.1 mRNA upstream 28472 8807234 ~ 8810347 (-) True tmem11
XM_039824555.1 mRNA upstream 33568 8812330 ~ 8816305 (-) True natd1
XM_039824633.1 mRNA upstream 71681 8850443 ~ 8856029 (-) False tufm
TU207482 other downstream 39845 8731397 ~ 8733019 (-) True G153172
TU207167 other downstream 328483 8441179 ~ 8444381 (-) True G152952
XR_005641918.1 other downstream 672466 8082138 ~ 8100398 (-) False LOC120574885
TU206683 other downstream 2052221 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 2544750 6182408 ~ 6228114 (-) True G152441
TU207525 other upstream 33580 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 74998 8853760 ~ 8856957 (-) True tufm
TU207546 other upstream 74998 8853760 ~ 8857571 (-) False tufm
TU207547 other upstream 74998 8853760 ~ 8856957 (-) False tufm
TU207570 other upstream 117024 8895786 ~ 8904340 (-) False zgc:55558

Expression Profile