RNA id: TU207442


Basic Information

Item Value
RNA id TU207442
length 4085
lncRNA type inter_gene
GC content 0.42
exon number 2
gene id G153139
representative True

Chromosome Information

Item Value
chromosome id NC_053126.1
NCBI id CM020923.1
chromosome length 38831509
location 8659611 ~ 8684753 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

GaaattttatttatgtatataatTCTGTTGTTTCTTTGTTAATCGTTTAATTCATAATACCCATAGAATATACAGACTATAACCCTCAATAACTCATATCTCTTTGACAATCTACTTATATCTTCTTTTAAAATAATTCCTTATAAGATCCTGGAGGGgaaatcaaaaagaaaaaaaaaaaaaaaaaggtttcataAAGATTGAACACTGCCAATAATAAACACGCccataagagaaaaaaatacaaataaaaacatcctaattataaaaaaaaaatgatacaaCTTAACTcccttttatgtaaaaaaaaaaaaaaaataaccaacGAGAAGAAAATACAACAACTCACCAATAGAACAACAATAGCGATAATAAGAACagccatttaaaaacaacaatatctGGAAACAGGCCTCATGACGGACAGGCCTTTAGACTCATCGATACTGTTTCAATGTATATGGTGTGTTTAAGTTTTCACTAACACGCACACTcctcagaaagagagaggaagtgtgtgtgtgtgcgtgtgtcaggAGGATTGCAAAATGGTCCTCTTGGTTCGTTCCCATGGTTACCCGGTGAGATGTTTGGTGGCATGTCTGcaagataagataaaaaaaaagaaaaaaaagaaaagaaaagcaaggTAGGGCCTGGTTGACTGGTGACCAAATATACTTGAAATACATACTAAATATCTGTACGACTGTTTATGGGTTATggtcaaaaagaagaaaataaaaatctctCAGATGTAAAAGCACAGGTAACggcagggacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacacaccttggctTTATGTTACTGGTGAGCAGATACACTCCTACACAGACATAAATTACTGCCGACGATCCATGAGCTttaacacacacagcaggcaaaACTTAAAGCTGAAGAGGGAGGACACAAGAGAAAAACAACATTGGGAGAGCAGAGAGCGTGGCTGGAAAGACAAAGTGCAGGCGTGCTGATTGAGTTATGCGAGTTTCCTGCATGTATGACCATCCGTGATCTGTGATCCAGGCGAGACAGGGGCAATGATTTTCTGCAGGAGGAAAAGTGGCGGCAAAGTCAGTGATATGGGTTAGAAGGTCTTCACCGATCCCACTGTGGAGGAGCAGACagaagaggggggaggaggaggacgggGGGAGGCAGCCCTTTGAGTAAAGCGTGGTGCGAGTGAGGAGGTTGAACAAATAAGATGGATATCACCACATGCACCGCAAAAGCCTCACACCGATCCCAAAGTGCTGGCTATGGCTTCTGAGAAAACCGCCTATGGCGCAGCTCGAGCCCgtaaaaaacaaatcaatgatTTTTGCTGCAAGAGGGCGAGGCCGGTGAGTGCATCACAGGCCtgccctgagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagagaatccaGTGCATGTTGGTCCATTTGTTGGGGGGGGGTCCCAGTGCAACAGGCAGAAATTAGTGCAGACTGAGCTGGACCTGCAGGTGGTGCTCCGCCAGGCCGCAATTAATACAGTCACATCCAGAACAAAGACAGGAGGGAGGAGACACCGACAGGaacaacaaagacacacattatacacacgcacaccctCAAAGAAACACGCCATCTGAGAAACGATGTAGCGTTAAATCGTCCACGTTGAAGAATAAACATCCAGTATGTTCACAGGTAGCCGGGGAAAAACACACAGGCGAGCGGGAACAGGAGCGCAAAAAGAAAACGAGcagagaggacacacacacacacacacacacacacacacacacacacaccacacacacacacacacacacacctaagtgATGATGGTTGCTTGGCTGTGCACTGAGCAGGAATAACTGTACAGCAATCCGACATTCCTGGGTTTGACCATTATGTCGTTGATTATGCCACATTCACGTCATATCGGAGTTTCCAACTTTTAAATAGCTCTTCTGTCAACTTGCATCTCGTAGTGACGACTTTTCTGAAAGCTCTGATTTATAACCCGTCTGGATGACACTTGCAAGTTGTACATGGGAATTTTTTCCATCTCTACCATATGTCGTGAACATAGCATTCATCAGCGACATGTACAGTTTTCTCAGTAGTCGTAAATGAGGTGCCATTCATGTAAAAGATCACAACTGGCGAACACTAAGCTGCAGCAACAGACTCCGGAAATTCAGGCCATTTACATTCAACACTCACATCAATGAGCCAGAAAGATCATAATCTGAAATTGCTCGTTGGAAAGTGCTCTTCTTTAGACCGCGTTCAAGTATGGCCACTTTGAATACGTGAATCTGTTTAGATTTGGGCCTTCGCTTCGGTAGTTAGGTCCAAGCCTGCATACACGCTCGACTCCGTACAGTCGCCCTGGGACAAACGGTAGCAAATAGGAACGCAGTACAAAAACAGCATGGTGGGATGGAAAGGCTGTCAACCAGACCCCATTTTCCAGAATGCCGTATGTGTTCCCAGACAGGGCTGTGGAAATAGAGGATTCACTAAAATGCAGGATCAAGAGGAGCTGAGGAACAACAAGGGGCTTCAGTGATGTTATGAGACAAGTAGTTCACCATTCAACTGCTATGCATTTGTAGcagaaatgtaatttaatataGGAATGTAATACCGACACTGGATCAGCGATTTGattttgtattacattgtaAAGGGACGCTGTGGGGCTAAAATGTGGACGATGCAGTAACGTTATACCGATATCCTTCCACCGTATAAACTTACATTAAGGCAGGTAGTTCCTGATCATcagaaaaaccaaaaaacgTTTTGACATGGCACAGAGTACCGTGAACGTTCTGGAAAATGGGGCTAGGTGTCACTGTTATTTTAATCAATACACAATTATATAAACTATATTTTTTGGCTGTTTGATTTCCATTTGTTCCAATCATGTAGCGCCTCCTGAATATAACCAACTTTCCACAAATGGAGGGGGTAGTCTGTCCTTGGTACAAGTTACAGGTCAAGAAATATGTTTAAGGTACGATTCAAAACGATTATAGATATTACTTAGTTGCTTCTCCGCCAAGTTTCCTGCATCTCTCTGCCACTTTGGTTAATTTCAGGAACGCATGCATTCATATGAACATCAtacagttttttgttgttgtttttttaaaaaaagaaaaagaaaagaaaaagagcgacgacaagaagaaaaaatggTATCTATAAACCTGTCAACATGCCAGTAAAAACATTGAATGTTTGTCTCAAAATCAagtgttcaaaaaaaaaaaagactagcaAATACAAACCCCAAAACATACAGATACGACTGATCCGAAAACACTCGAACAACGGTGTACAAACAAAAACTGAGACGAGCACAagcttttatatttttgtatatacacacacacatacacccgaTTAGCATCCCCGTTCTTTTAGCCCTCAAATTTTTCCAGGTTGTAATTTACATGGTGCAAGACAAGAGAGTTATGGTGTTGGTTAATACAGTAGTTTATATGAGAGGGAGCAACAGAGAGAGCTCCAGCAACAGCTGCAGGAGAGAGGCGGAAAAGGGGTCTGATCGGGACAGGCGAGACACAGTGAGTTACTGTAAATGGGACGGGATGAGGCAGGACCTTTAACGGGAAAACTAAATGTGAGGCAAGAGGATGGAGAGTCCAACAGGGTTAAAACTGAAACAGCATGAGTACGACAGACCCtaccaccccaccccaccccaccacagaaaaaaagttaaacttaGCTCTCCTGCAGTAGAAATAGAAAGATAAGCAGTTAAATGTTCAtttcttgttttctctttttgtcgGTTTCTTGAAGATGCATTTTTCGTTTTGTTTTAGCATGTCGTTGGGGTCTTCTTGTTCCAAGCCTCGGTGTGGCTTTGTCACTCTTtag

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU207448 lncRNA downstream 33356 8647083 ~ 8647291 (-) True G153143
TU207447 lncRNA downstream 35622 8644784 ~ 8645025 (-) True G153142
TU207421 lncRNA downstream 64535 8612277 ~ 8616112 (-) True G153130
TU207412 lncRNA downstream 92459 8554508 ~ 8588188 (-) True G153124
TU207433 lncRNA upstream 15356 8700109 ~ 8701788 (-) False G153137
TU207437 lncRNA upstream 15356 8700109 ~ 8719900 (-) False G153137
TU207438 lncRNA upstream 15356 8700109 ~ 8719900 (-) True G153137
TU207435 lncRNA upstream 33440 8718193 ~ 8719900 (-) False G153137
TU207436 lncRNA upstream 33440 8718193 ~ 8776266 (-) False G153137
XM_039825208.1 mRNA downstream 14993 8660302 ~ 8665654 (-) True nudt9
XM_039825844.1 mRNA downstream 21428 8651632 ~ 8659219 (-) True si:ch211-11k18.4
XM_039824671.1 mRNA downstream 40212 8627083 ~ 8640435 (-) False rabep2
XM_039824670.1 mRNA downstream 40214 8627083 ~ 8640433 (-) True rabep2
XM_039823763.1 mRNA downstream 160060 8513629 ~ 8520587 (-) True LOC120573875
XM_039824521.1 mRNA upstream 54878 8739631 ~ 8768700 (-) True mapk8ip3
XM_039824533.1 mRNA upstream 54878 8739631 ~ 8768698 (-) False mapk8ip3
XM_039824541.1 mRNA upstream 54878 8739631 ~ 8768698 (-) False mapk8ip3
XM_039824540.1 mRNA upstream 54878 8739631 ~ 8768698 (-) False mapk8ip3
XM_039824525.1 mRNA upstream 54878 8739631 ~ 8768698 (-) False mapk8ip3
TU207167 other downstream 236266 8441179 ~ 8444381 (-) True G152952
XR_005641918.1 other downstream 580249 8082138 ~ 8100398 (-) False LOC120574885
TU206683 other downstream 1960004 6719784 ~ 6720643 (-) True G152567
TU206522 other downstream 2452533 6182408 ~ 6228114 (-) True G152441
TU206278 other downstream 3066979 5610556 ~ 5613668 (-) False atp5mf
TU207482 other upstream 46644 8731397 ~ 8733019 (-) True G153172
TU207525 other upstream 127589 8812342 ~ 8816276 (-) False natd1
TU207545 other upstream 169007 8853760 ~ 8856957 (-) True tufm
TU207546 other upstream 169007 8853760 ~ 8857571 (-) False tufm
TU207547 other upstream 169007 8853760 ~ 8856957 (-) False tufm

Expression Profile