Gene
RNA
| Item | Value |
|---|---|
| RNA id | TCONS_00043330 |
| length | 1027 |
| RNA type | mRNA |
| GC content | 0.46 |
| exon number | 5 |
| gene id | XLOC_021860 |
| representative | False |
| Item | Value |
|---|---|
| chromosome id | NC_007134.7 |
| NCBI id | CM002907.2 |
| chromosome length | 46223584 |
| location | 36087219 ~ 36149371 (+) |
| genome version | GRCz11_2017_zebrafish_Genome |
| species | zebrafish (Danio rerio) |
| id | name | namespace |
|---|---|---|
| GO:0006355 | regulation of transcription, DNA-templated | biological_process |
| GO:0007275 | multicellular organism development | biological_process |
| GO:0009952 | anterior/posterior pattern specification | biological_process |
| GO:0045944 | positive regulation of transcription by RNA polymerase II | biological_process |
| GO:0048704 | embryonic skeletal system morphogenesis | biological_process |
| GO:0005634 | nucleus | cellular_component |
| GO:0043565 | sequence-specific DNA binding | molecular_function |
| GO:0003677 | DNA binding | molecular_function |
| GO:0003700 | DNA-binding transcription factor activity | molecular_function |
| GO:0000978 | RNA polymerase II cis-regulatory region sequence-specific DNA binding | molecular_function |
| id | description |
|---|---|
| ZDB-GENE-980526-532 | Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; embryonic skeletal system morphogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. |
| ensembl_id | ENSDART00000154825 |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TCONS_00043323 | lncRNA | upstream | 117474 | 35969429 ~ 35969745 (+) | False | XLOC_021856 |
| TCONS_00043317 | lncRNA | upstream | 288940 | 35790808 ~ 35798279 (+) | True | XLOC_021854 |
| TCONS_00044872 | lncRNA | upstream | 357157 | 35729255 ~ 35730062 (+) | True | XLOC_021852 |
| TCONS_00044870 | lncRNA | upstream | 359697 | 35723438 ~ 35727522 (+) | False | XLOC_021851 |
| TCONS_00043342 | lncRNA | downstream | 2382 | 36150430 ~ 36154411 (+) | True | XLOC_021868 |
| TCONS_00044680 | lncRNA | downstream | 169301 | 36317349 ~ 36317913 (+) | True | XLOC_021871 |
| TCONS_00044681 | lncRNA | downstream | 171130 | 36319178 ~ 36319588 (+) | True | XLOC_021872 |
| TCONS_00044873 | lncRNA | downstream | 216857 | 36364905 ~ 36365917 (+) | True | XLOC_021874 |
| TCONS_00044874 | lncRNA | downstream | 270071 | 36418119 ~ 36420278 (+) | False | XLOC_021875 |
| TCONS_00043328 | mRNA | upstream | 324 | 36083529 ~ 36086895 (+) | False | XLOC_021856 |
| TCONS_00043329 | mRNA | upstream | 625 | 36083617 ~ 36086594 (+) | True | XLOC_021856 |
| TCONS_00043322 | mRNA | upstream | 853 | 35969228 ~ 36086366 (+) | False | XLOC_021856 |
| TCONS_00043321 | mRNA | upstream | 853 | 35969228 ~ 36086366 (+) | False | XLOC_021856 |
| TCONS_00043326 | mRNA | upstream | 9087 | 36074798 ~ 36078132 (+) | False | XLOC_021859 |
| TCONS_00043343 | mRNA | downstream | 30056 | 36178104 ~ 36190988 (+) | True | XLOC_021869 |
| TCONS_00043344 | mRNA | downstream | 158491 | 36306539 ~ 36309617 (+) | False | XLOC_021870 |
| TCONS_00043346 | mRNA | downstream | 160380 | 36308428 ~ 36310415 (+) | False | XLOC_021870 |
| TCONS_00043347 | mRNA | downstream | 160669 | 36308717 ~ 36309569 (+) | True | XLOC_021870 |
| TCONS_00043348 | mRNA | downstream | 192472 | 36340520 ~ 36354106 (+) | True | XLOC_021873 |
| TCONS_00043305 | other | upstream | 617360 | 35426577 ~ 35469859 (+) | False | XLOC_021842 |
| TCONS_00043302 | other | upstream | 626210 | 35402697 ~ 35461009 (+) | False | XLOC_021842 |
| TCONS_00043297 | other | upstream | 1902205 | 34053506 ~ 34185014 (+) | True | XLOC_021835 |
| TCONS_00043296 | other | upstream | 1902210 | 34047563 ~ 34185009 (+) | False | XLOC_021835 |
| TCONS_00043293 | other | upstream | 2033510 | 34047416 ~ 34053709 (+) | False | XLOC_021835 |
| TCONS_00043345 | other | downstream | 159613 | 36307661 ~ 36310418 (+) | False | XLOC_021870 |
| TCONS_00043352 | other | downstream | 343066 | 36491114 ~ 36491234 (+) | True | XLOC_021877 |
| TCONS_00043358 | other | downstream | 642175 | 36790223 ~ 36790332 (+) | True | XLOC_021884 |
| TCONS_00043361 | other | downstream | 938117 | 37086165 ~ 37093123 (+) | False | XLOC_021888 |
| TCONS_00043368 | other | downstream | 1290786 | 37438834 ~ 37438950 (+) | True | XLOC_021894 |
