RNA id: TCONS_00043341


Basic Information

Item Value
RNA id TCONS_00043341
length 2836
RNA type mRNA
GC content 0.38
exon number 2
gene id XLOC_021860
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36087219 ~ 36149371 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATCCTTTTACTTGTGTTGCAATTTCCTTAACATTaaagaaacacatttttacaAAGCACGATGATAGAGATAGACAATGTAGCCAATATGCTATTATTACTAAAGTATTTTATTCGCAATAAAACATCGCTAAAATGTACATCACTATTTACGTAAGATTAAAACCGGTTAAAATACGCAACTGAAGAACATTGGCAAGCGTAAGGAACTGTTGTTAGATCAGCAAAGTGTGAAATGAATAGTTATTTAACCATAAAGCTAAACAAGTCGATCATTTTTAAATACCTACCACAAGAGGACTGAAAAGTCAGTCAAAgatttaaacattgttttataaaacattatcacGGAAATTAAGTCAGTATTCTTCAATCCATTGAAGCAAAAACTAAGACGACGCGATCCCAGACATGTCTTTTCTCTGTCCAAaatgggtctctctctctctccctcccacCTCACGCTCTCTGAACTCGTGTCAGCACGATGACAGGGTAATGTATGCGCCCTGCTCATGGTTTTTCGTCTGTCCACAGGAAAATCACTCGAAATGGCAAAACAGTCGAAGAATGCGGATGAAAACGGAATCACCGTTTGGCTGCTTACATGCAGTTTACAACTCAAACACCGAGTGCGCAAGGCTATTGGAGGAGGCCACCACGTGACTACATTGTTTACTCTTGTTGGCAAACAATTAAAGACGCGAGTAAGTGTATTTTTTGGCTTTCCTACACCTCGAATGAACAATTATATATTTCGGGTGATTAGGACGATTAGAAATGAACAATAACTCGTTTCACGAATATAATTTTAACAGTGAATACTTAAACAAAATATGTTGCAATAAATCTTATGTTTGTTATATGGGGCAACATTTCTCCCCCTGTGCTCTGCAGGAGAACAGTTCTACGTGGAAACGACATGCTGAAGAAAGTTCATCAGAAAATGATAAAGGCAACGTGTGGAACTTTCAAAACCTCTCGAATGTCCAACATCCCTATTCATTCTCTGATGATGGCAACCACTCTTTGGACCCTGCGAATGCATTGGAAAGAGAAAAGGCATGTGAGCTGTCAACTTCCTGCTTATCAACCATGAAGTACCCTTGGATGAGAGAGACACATGCACCCACGCACTTCAGCTCCATTAACGCCATGGAATCAGGTGATTCTAAATACAGCAATGGTGAAGCAGTTGTACGGAATAGCAGCAGTAAACGGGCTCGTGTGGCGTTCACCTCCTCTCAGCTGCTGGAGTTAGAGAAGGAGTTTCACTTCAGCGCTTACCTGTGCCGCAACCGGAGACTTGAAATGGCTGAGCTGCTGAAGCTCACCGACCGGCAGATTAAAATCTGGTTCCAAAACCGTCGCATGAAGTATAAGAAGGACCACAAGGAAAAGTCAACGGCAAAGTCCTCTTACACCTACCTGGGAACAGAAAACCAGCCATTAATAATTAGCAGAAGCACAACAGATTCTCCAGTGCCATTGAAATTCCAGAATAACTATGAAACACCATCAATGAACTGGTGAAATTACAGAAAAACTGAAAACTGGTGACTTTTGCTTTTAGAACTTATATAATGATAGTAATCTGCATCAACCATAAagactgaaaatgaatgaatgaatgaatgaatgaatgtgtgaatgaatgaaatttctaCAAAACATGTACATGATCTGTCACTGTTCAGCTATTTCTCCATTTGTAACTCTCTCTGACatgatttatatttaaaaacattgatgaTTAATTGCCTCTGGATGATGATTTATGTGCAAAGTTAACTTGGAAGAGTTCAATAGGCAAGCTCGCTCTGAACCAGATTACATGATATCAGCTAGTACATTTCAGAGTTAGTCTCTATTGTGCATAAACTGCTGTAGTAATATCTTTGCAAAGCACCAAGATTTATTGCAACCCTACTTGTGCAAGTTTATCTCTTGGGCAcagaaaatacaattttaaaagggCATTCAAGACTTTGAATGGTCATTAACATCCTCTCAACTTTTTAAGTGcacaacatattttttattactctCAAAATGATATGCTACTTTTCCCAAGGCATGAGCTAAAATGTACAACTTGCAGCGTTGTTCATTATGATGGTCACAATTGTTCCATGTTAAAGCCTATTGACCTGCTCTACTATTAACAATGAATTTGAATGACTTTTTTTCTGCTTTACACTGAAAGTAGGTGCGTTTAAGTCTGAATTTACAGCATATCTACtgacaaaatgaatgaaagagcAAAGCAGGATTTTCACAATGCTATATCAATGCATTTATAGTGTAATTACTTTACCCATTCATGTACACAAAAGTGTCAACATGGCAGCTGCAATGTAAAATATGTGCATATTTGTAATTTATACCATTTCAATTATAACCTGTCCATATTTgacaaaaaaacatgcattttgaaaataataagtggttgttttttaaactgatttattcCCTCTGGATAGTCAATAAATAATCATTGTAATTCATGTAACTGAcaataatgttgttttgtttagttaAAACAGGTAATGGTGAGtctaaatttagcttaaaggtgctTCTGTGAATCTTACTTGATACTTTTTGAATTAGGCAATACTGTACTTTGCATTCTTAAAACATAACCTTACATATATGCCTTCCTCCGCCTCCGCCTACCAACCTCGGAACATTAATCATTTAGAcaaggctctctctctctctctctctctctctctcagcttcACAAGTGCTCAACCCGCTGGGCCAAATGACAGGCTGTGCGCTTCTCTTCCAACACACTTCTCTCCAATACGGGAGCTGAAATACATCTAGA

Function

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0007275 multicellular organism development biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0045944 positive regulation of transcription by RNA polymerase II biological_process
GO:0048704 embryonic skeletal system morphogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0043565 sequence-specific DNA binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0003700 DNA-binding transcription factor activity molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-980526-532 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in anterior/posterior pattern specification; embryonic skeletal system morphogenesis; and regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus.

Ensembl:

ensembl_id ENSDART00000082473

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043323 lncRNA upstream 174742 35969429 ~ 35969745 (+) False XLOC_021856
TCONS_00043317 lncRNA upstream 346208 35790808 ~ 35798279 (+) True XLOC_021854
TCONS_00044872 lncRNA upstream 414425 35729255 ~ 35730062 (+) True XLOC_021852
TCONS_00044870 lncRNA upstream 416965 35723438 ~ 35727522 (+) False XLOC_021851
TCONS_00043342 lncRNA downstream 1059 36150430 ~ 36154411 (+) True XLOC_021868
TCONS_00044680 lncRNA downstream 167978 36317349 ~ 36317913 (+) True XLOC_021871
TCONS_00044681 lncRNA downstream 169807 36319178 ~ 36319588 (+) True XLOC_021872
TCONS_00044873 lncRNA downstream 215534 36364905 ~ 36365917 (+) True XLOC_021874
TCONS_00044874 lncRNA downstream 268748 36418119 ~ 36420278 (+) False XLOC_021875
TCONS_00043340 mRNA upstream 11924 36130883 ~ 36132563 (+) True XLOC_021867
TCONS_00043337 mRNA upstream 23976 36118738 ~ 36120511 (+) True XLOC_021865
TCONS_00043336 mRNA upstream 27580 36115541 ~ 36116907 (+) True XLOC_021864
TCONS_00043333 mRNA upstream 40852 36101185 ~ 36103635 (+) True XLOC_021863
TCONS_00043332 mRNA upstream 46999 36095260 ~ 36097488 (+) True XLOC_021862
TCONS_00043343 mRNA downstream 28733 36178104 ~ 36190988 (+) True XLOC_021869
TCONS_00043344 mRNA downstream 157168 36306539 ~ 36309617 (+) False XLOC_021870
TCONS_00043346 mRNA downstream 159057 36308428 ~ 36310415 (+) False XLOC_021870
TCONS_00043347 mRNA downstream 159346 36308717 ~ 36309569 (+) True XLOC_021870
TCONS_00043348 mRNA downstream 191149 36340520 ~ 36354106 (+) True XLOC_021873
TCONS_00043339 other upstream 14395 36130001 ~ 36130092 (+) True XLOC_021866
TCONS_00043331 other upstream 56291 36088091 ~ 36088196 (+) True XLOC_021861
TCONS_00043305 other upstream 674628 35426577 ~ 35469859 (+) False XLOC_021842
TCONS_00043302 other upstream 683478 35402697 ~ 35461009 (+) False XLOC_021842
TCONS_00043297 other upstream 1959473 34053506 ~ 34185014 (+) True XLOC_021835
TCONS_00043345 other downstream 158290 36307661 ~ 36310418 (+) False XLOC_021870
TCONS_00043352 other downstream 341743 36491114 ~ 36491234 (+) True XLOC_021877
TCONS_00043358 other downstream 640852 36790223 ~ 36790332 (+) True XLOC_021884
TCONS_00043361 other downstream 936794 37086165 ~ 37093123 (+) False XLOC_021888
TCONS_00043368 other downstream 1289463 37438834 ~ 37438950 (+) True XLOC_021894

Expression Profile

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