RNA id: TCONS_00043347


Basic Information

Item Value
RNA id TCONS_00043347
length 620
RNA type mRNA
GC content 0.45
exon number 2
gene id XLOC_021870
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 36306539 ~ 36310418 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGTGGAGGAGGTGGAAACTACAATGACTTCGGCAACTATAATAGCCAGCAGTCCAACTATGGTCCCATGAAAGGGAACTTTGGAGGCGGTGGAAGAAACAGTGGCCCATATGGTGGTGGCTATGGAGGTGGATCTAGTGGTAGTGGAGGAGGCGGCAGTGGTTATGGAGGTGGCTCTGGCGGTAGACGGTTTTAAGCTTAAAGGTTTGTTTTAGATTTTGCTGTCTACCATGCATATAGACTTATAACAGGGGTAACGATCCCAATAAGTTAGTCTTGGACTAAATACTCTAAACTGTAACCTTGCTGTACATCTGGTGTAGAAACAACCCTCAGGTAGTGTGCAGCTTAACATTTGTTGTTCATATTGTTCAACAGGACTGAGTGCTTTAGGAGAGGAGAGCGAGAGAGGTGACAGGGCAGATGCAGGTTTACGTCCCTAGATCTGCTCAGCCAAACAGGTGTGGCAGATTTACAGCTGCCACCAGAAGAAGTGTACAGTAGCGCTATCGTGTGTGGGACATCATGAATTTGTCATCAtgcagatttattttatattgtcttTGGGGAAAAGCATTCCAATGAGGTTTTATGTAGAGTTCCtttcagttgtttttatt

Function

GO:

id name namespace
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function
GO:0003729 mRNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030912-14 Predicted to enable RNA binding activity. Predicted to be located in cytoplasm; nucleus; and viral nucleocapsid. Is expressed in brain; gut; retina; and trunk. Human ortholog(s) of this gene implicated in amyotrophic lateral sclerosis type 20; inclusion body myopathy with early-onset Paget disease of bone with or without frontotemporal dementia 3; and tropical spastic paraparesis. Orthologous to human HNRNPA1 (heterogeneous nuclear ribonucleoprotein A1).

Ensembl:

ensembl_id ENSDART00000131711

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00043342 lncRNA upstream 154306 36150430 ~ 36154411 (+) True XLOC_021868
TCONS_00043335 lncRNA upstream 163391 36109453 ~ 36145326 (+) False XLOC_021860
TCONS_00043323 lncRNA upstream 338972 35969429 ~ 35969745 (+) False XLOC_021856
TCONS_00043317 lncRNA upstream 510438 35790808 ~ 35798279 (+) True XLOC_021854
TCONS_00044872 lncRNA upstream 578655 35729255 ~ 35730062 (+) True XLOC_021852
TCONS_00044680 lncRNA downstream 7780 36317349 ~ 36317913 (+) True XLOC_021871
TCONS_00044681 lncRNA downstream 9609 36319178 ~ 36319588 (+) True XLOC_021872
TCONS_00044873 lncRNA downstream 55336 36364905 ~ 36365917 (+) True XLOC_021874
TCONS_00044874 lncRNA downstream 108550 36418119 ~ 36420278 (+) False XLOC_021875
TCONS_00043349 lncRNA downstream 108569 36418138 ~ 36420278 (+) False XLOC_021875
TCONS_00043343 mRNA upstream 117729 36178104 ~ 36190988 (+) True XLOC_021869
TCONS_00043341 mRNA upstream 159346 36144487 ~ 36149371 (+) True XLOC_021860
TCONS_00043338 mRNA upstream 160649 36122058 ~ 36148068 (+) False XLOC_021860
TCONS_00043340 mRNA upstream 176154 36130883 ~ 36132563 (+) True XLOC_021867
TCONS_00043337 mRNA upstream 188206 36118738 ~ 36120511 (+) True XLOC_021865
TCONS_00043348 mRNA downstream 30951 36340520 ~ 36354106 (+) True XLOC_021873
TCONS_00043351 mRNA downstream 150670 36460239 ~ 36488629 (+) True XLOC_021876
TCONS_00043353 mRNA downstream 292415 36601984 ~ 36605837 (+) True XLOC_021879
TCONS_00043354 mRNA downstream 307148 36616717 ~ 36645135 (+) True XLOC_021880
TCONS_00043355 mRNA downstream 343807 36653376 ~ 36655640 (+) True XLOC_021881
TCONS_00043339 other upstream 178625 36130001 ~ 36130092 (+) True XLOC_021866
TCONS_00043331 other upstream 220521 36088091 ~ 36088196 (+) True XLOC_021861
TCONS_00043305 other upstream 838858 35426577 ~ 35469859 (+) False XLOC_021842
TCONS_00043302 other upstream 847708 35402697 ~ 35461009 (+) False XLOC_021842
TCONS_00043297 other upstream 2123703 34053506 ~ 34185014 (+) True XLOC_021835
TCONS_00043352 other downstream 181545 36491114 ~ 36491234 (+) True XLOC_021877
TCONS_00043358 other downstream 480654 36790223 ~ 36790332 (+) True XLOC_021884
TCONS_00043361 other downstream 776596 37086165 ~ 37093123 (+) False XLOC_021888
TCONS_00043368 other downstream 1129265 37438834 ~ 37438950 (+) True XLOC_021894
TCONS_00043373 other downstream 1183166 37492735 ~ 37492851 (+) True XLOC_021899

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
bowfin (Amia calva) TU64717 False 1279 lncRNA 0.44 2 CM030126.1 12658484 ~ 12660117 (-)