RNA id: TCONS_00044418


Basic Information

Item Value
RNA id TCONS_00044418
length 1711
RNA type mRNA
GC content 0.44
exon number 10
gene id XLOC_022521
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35468834 ~ 35483310 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CGCGACAGAGCGCTAGGGATAAATCTACGAGTGATAGACAGGGCCGAGGACCAATCAGCTCGGGAATTCCGGGTagcaacaaaataaatacaaacacgACGGCCAATCGCAATCACCGGGAGGCGTGTCTTACACTCCGCTTTTCTGACTGTTTACTTCCGTCAATATtcaaagaaaagaagaaaattaTCAGCATAACAAAGGACTCGCAGTAAGTAAACTTAAATATGCGTCAGTTATCAGCCCCAATACGTGACTTTGCGAGTAAAACGTAAATTGAGGTAGATACTAGAGCTGTCTTTAGTGTTTTGTCGTCGTTTAAAAAGATAAGCTTCCTGGCAGGCTTTGCGTTTAAGCAAATTAACTGGCAGTAGTTGTTCAACAAGCCAGAGCTTAGAAACAATTCACAAATAACGTCAAAGTGCGTCATGTTTGTATTTTGAAATATAGTTATTTACATCAAGATTGTTGACTGAAGTACTCTGTGTTGTCATATCACACCATACTGATATAAAGTCTGATGTGTGATAAACCTTTGTTCTGTGTCATAATGGTTTGAGATAATAGTCTCTTGTATTCAGGTCTCTGGAGCaggtggaagaagaagaagaagatgccTTTCTTGGGTCAAGACTGGAGATCTCCAGGCTGGAGTTGGATCAAAACTGAGGATGGCTGGAAGCGCTTTGATTATTTCAGCCACAAATTGGGAGATAACATCAATGAACTTGGCTTGGAAGAATTGGACAATGACAACAAGGAGAACGTCTACGTGGGAGATGTCTGTGAAGTAGCTGCCAAGAAGAGGAAAAAGGACTTTTTCAACAACAACACTAAGTCacaatttttgttCCAGGAGAGGTGGATCTATGTTCAAAAAGAGAGTACAAGAGAGAGACATGGGTATTGTACGCTTGGTGAGGCCTTTAATCGTCTGGACTTTTCCAGCGCCATTCAGGATGTGCGGCGATTCAACTATGTAGTTAAACTTCTGCAGCTGATTGCCAAATCCCAGCTGACGTCTTTGAGTGGAGCTGCTCAGAAGAACTACTTTAACGTTCTGGAGAAGATTGTGAGGAAAGTTCTTGAAGACCATCAGAACCCGCGACTGATCAAGGCACTGCTGCACGATTTAAGCTCCACGCTTTGCATCCTCATCCGAGAAGTTGGAAAGTCTGTGTTGGTCGGCAACATTAACATTTGGGTCTGCCGTTTAGAAACCATCTTAAAATGGCAGCAGCAGCTCAATAATTTACAAATTCCAAAGcaagttTCAAACGGGATGACACTGAGCGACCTCCCTTTGCACATGCAAACCAACATCCTTTACCAGTTTACCGATGCCTATGACATCATCAATCTGGGACAAGCCACGCCAACGCTGCAAATGCTCAGCGAGGACCGACATCTGTGGAAGAAACTGTGCCAGTTTCACTTTGCTGAAAAACAGTTCTGCAGGCACTTGATTTTGTCAGAGAAGGGCCATGTGGACTGGAAGCTGATGTTTTTCACACTTCAGAAATACTACCCACAGAAAGAGCAGTACGGGGACACTCTGCAGTTCTGTAGGCACTGTAGCATCCTCTTCTGGAACGACAGACACCTGGCTTTGATCTTTAAGGACTCGGGACATCCCTGCACGGCCAACGATCCTGACAGCTGCCTCACCCCCGTCTCTCCTCAGCACTTCATAGACCTCTTCAAATTCTGA

Function

GO: NA

KEGG: NA

ZFIN:

id description
ZDB-GENE-040801-19 Predicted to be involved in protein ubiquitination. Predicted to be part of SCF ubiquitin ligase complex. Predicted to be active in cytoplasm and nucleus. Is expressed in epiphysis; gut; hindbrain; olfactory placode; and peripheral olfactory organ. Orthologous to human FBXO25 (F-box protein 25).

Ensembl:

ensembl_id ENSDART00000189269

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044416 lncRNA downstream 73004 35393107 ~ 35396760 (-) True XLOC_022520
TCONS_00045063 lncRNA downstream 266680 35200692 ~ 35203084 (-) True XLOC_022518
TCONS_00044744 lncRNA downstream 701613 34767321 ~ 34768151 (-) True XLOC_022515
TCONS_00044397 lncRNA downstream 1705489 33761148 ~ 33764275 (-) False XLOC_022511
TCONS_00044394 lncRNA downstream 1719444 33747413 ~ 33750320 (-) True XLOC_022510
TCONS_00045064 lncRNA upstream 57050 35540360 ~ 35549662 (-) False XLOC_022523
TCONS_00045065 lncRNA upstream 180542 35663852 ~ 35665582 (-) False XLOC_022525
TCONS_00045066 lncRNA upstream 180542 35663852 ~ 35669221 (-) True XLOC_022525
TCONS_00044436 lncRNA upstream 537486 36020796 ~ 36051826 (-) True XLOC_022532
TCONS_00044437 lncRNA upstream 598115 36081425 ~ 36088234 (-) True XLOC_022533
TCONS_00044413 mRNA downstream 72786 35361724 ~ 35396978 (-) False XLOC_022520
TCONS_00044412 mRNA downstream 72786 35361724 ~ 35396978 (-) False XLOC_022520
TCONS_00044414 mRNA downstream 72893 35362775 ~ 35396871 (-) False XLOC_022520
TCONS_00044415 mRNA downstream 72919 35389266 ~ 35396845 (-) False XLOC_022520
TCONS_00044410 mRNA downstream 122026 35244378 ~ 35347738 (-) False XLOC_022519
TCONS_00044420 mRNA upstream 2727 35486037 ~ 35491587 (-) True XLOC_022522
TCONS_00044421 mRNA upstream 61754 35545064 ~ 35547613 (-) False XLOC_022523
TCONS_00044422 mRNA upstream 61768 35545078 ~ 35545554 (-) True XLOC_022523
TCONS_00044423 mRNA upstream 158751 35642061 ~ 35649000 (-) True XLOC_022524
TCONS_00044424 mRNA upstream 207347 35690657 ~ 35694171 (-) False XLOC_022526
TCONS_00044409 other downstream 213319 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044402 other downstream 1483399 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044400 other downstream 1500776 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044391 other downstream 1724993 33739477 ~ 33744771 (-) False XLOC_022510
TCONS_00044369 other downstream 2168345 33301304 ~ 33301419 (-) True XLOC_022500
TCONS_00044432 other upstream 381416 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044435 other upstream 515237 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044457 other upstream 838700 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044460 other upstream 930388 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044467 other upstream 1026687 36509997 ~ 36510119 (-) True XLOC_022543

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_02666739_02671962.mRNA True 1805 mRNA 0.39 10 CI01000001 2666469 ~ 2672408 (+)