RNA id: TCONS_00044414


Basic Information

Item Value
RNA id TCONS_00044414
length 3055
RNA type mRNA
GC content 0.48
exon number 24
gene id XLOC_022520
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35361724 ~ 35396978 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

ATGTGACGTCATCAACATGCACCAGCAGTACGGATTTGTGACCCATTGGATTAAACATGAAGAGAGCAGCACAAGCATCAGACGAGCCTCTGAAGAAGAGGAAGACGGCCCGTGAGGAATCGTCCGATGAAGATGAGGAGTCTTCTCAAAGAACCACCAGTCAGGACTCGAGTCAGAGTGAATCTCTCAGTGATGTTGAGGATCATAAACCCAGTTTCTCCAGGCCATCTGATTCCCAAAATTCTCAAGGCAGCATGGCCCATAATGAAGCCTCTAACAAATTTGCGATGTACAATAATGTCTCTCAGAAACTCATGGCCAAAATGGGTTTCCGAGAAGGCGAGGGTTTGGGAAAGTATGGTCAGGGCCGGAAGGAGATTGTGGAAGCGTCGACTCAGCGTGGGCGCCGGGGTTTGGGTCTGATGCTGAAGGGCTTTCAGGGTGACCTAAATGTAGACTGGGAAGATGAGCCGGAGCCGAGTGCTATAGAACAGGTGTCGTGGTTTCCAGAAAGTTCTCCAGAGATCCCAGATTCGGATGAGCTGAGGGATTGGATGACCATTGGAGAGaaaaaattaaaaattgacgATGAAATCGAGTTTTGCTCAGAGAATCTGCTGCATCTCCTTCTCCGCTGTAAAACTGTGTTTGATGACTTGGAAGGTGAGGAGATGAGGCGAGCGCGCACTCGATCAAACCCGTATGAAACCATCCGAGGGGCTTTTTTTcttaacagAGCTGCTATGAAGATGGCGAACATGGATCATGTTTTTGACTATATGTTCACCAACCCAAAAGACTCTCAAGGGaaagtCCTGACGCGTGATAAAGAGGGTGAATTGCTGTATTTCGGAGACGTTTGCGCAGGACCGGGAGGATTCTCGGAGTATGTGTTGTGGCGACGGCGCTGGCATGCTAAAGGTTTTGGGATGACACTTAAAGGAGCAAATGATTTCAAGCTGGAAGATTTCTATGCTGCACCTAGTGAGCTCTTTGAGGCCTATTACGGTGAGGGTGGGATCGATGGCGATGGTGACATCACACGGCCCGAGAACATCAGTGCGTTTCGTAATTTTGTCTTGGACAGCACTGAGGGCCGGGGCCTGCACTTCTTAATGGCGGATGGGGGCTTTTCTGTGGAGGGACAAGAAAACCTTCAGGAGATTCTGAGCAAGCAACTGCTCCTGTGTCAATTTCTTACCGCCCTGTCTGTCGTCAGACCAGGAGGCCATTTTTTGTGCAAGACGTTTGACTTGTTCACTCCGTTCAGCGTGGGCTTGATTTATCTGCTGTACCTCTGCTTCGAGAGGGTCTCGCTCTTCAAACCCGTCACCAGTCGGCCTGCCAATTCAGAGAGGTACGTGGTGTGCAAGGGTTTAAAACCAGGCACGGATGCCGTCAGAGAATACATGTTCACCATCAACCTGAAGCTGAATCAGTTCAGACACTCAGACAGAGACGTTATTGAAGTCGTCCCTCTGGACATCATTAAAGGAGACACTGACTTCTTCCAATACATGATCGGCTCCAATGAAAGCTATTGTGCGGTTCAGATCAAAGCTCTGGCGAAGATCCACGCGTACGTCAGAGATACGACGCTGTTTGAGGCCAGGCAAGCAGACATACGCAAAGAATGCTTGAAATTGTGGGGGATCCCTGATAAAGCAAGAGTCACTCCGTCAACGTCAGACCCCAAAAACAAGTTTTATGAGCTTGTGAAGGGTTCAGAAATGGACAGTTTTAACTCCAGACCTACTGCACTGAACTCTGTAAATCTGGAGAAACTACAGCACGTGCTGGACTACAGGTGCATTGTGGGAGGTGGAGAACAGCTTTTTCTCCTGGCACTTGGGAGATCTCAGATTTACACGTGGGACGGTAAAGCCCCTTCACGGTGGAAGAAACTGGAGAACTTCAAAATGGAGCTTCCCAGAGACACATTGCTGAGCGTAGAGATCGTCCAGGAGCTGAAGGGAGAGGGAAAAGCCCAGCGAAGGATCAACGCTGTGCATGTTCTCGATGCTCTTGTTCTCAACGGCACTGACGTCAGAGATCAGCACTTCAACCAGAGaaTCCAGATGGTGGAGAAGTTTGTGAAAGCCGTGTCCAAACCCAGCAGGCCCGACATGAACCCGATCCGAGTGAAGGAAGTCTATAGGTTGGAGGAGATGGAGAAAATCTTTGTGAGGTTGGAAATGAAGATAACCAAAAGTTCAGGAGGGATGCCGAGACTATCGTACACAGGCAGAGATGATCGTCACTTCCTCCCGACCGGCCTTTACATCATCAAAACAGTGAATGACCCATGGACAATGGCTTTCAGCAAAAGTTCTAAAAGAAAGTTTTTCTACAACAAGCAGACCAAAGAATCCACTTACGATCTGCCAGCCACTTCTGTGGCACCTTTCCACGTGTGTCATCAAGACAGGCTGTTTTGGGCTTGGGAGGAAGGCGTCCGAGTTCACGACTCCCAGACGAGGATCAACCCTGACAAGCTCTCCAAAGATGATGTGGTTTCCTTCATCCATAAGCACTATCAACAAtaaccacacacatgcacacacaaagtaACAGACTGTTCATTCTCCTGTCCACCAGGAGGCACTGTAGCTTTCAAAACAGTCCAGCATTCTGCTCAGTTTCTACACACTTCAGGGCTTCAGAAATAGACAGCAGTGTGTATCTGCATGTGTCTGGCATTTCTAGAGGAGAAACTTAGATCACACTGCTTTTCGCTTGTTGGTGTGTTTTTCTCCTGAACTTCAACCCCCCTCCACCCCACGCCCCTGATTCCTCGTATGAATTTTTCCTCTGCTAAACCGTTCGATTTTTAGATCCATCCCGTCAGTGCGATAACCGCGTTTAACAAAAGCGCATGGCGGTTAGCATTGGCTCTACTGTGTTGCATGTGTCGCCTTGCGCTCTTCATTTtggtttgtatttcttttttcagTGTTTACAAATATTAGACTGACTGTTCTGAGGGGAAAACATGTCGATTTTAAGACTATTCGTGATCATGGTTGTATTAAAATCATGGAGGAAGAATATTCCA

Function

GO:

id name namespace
GO:0097309 cap1 mRNA methylation biological_process
GO:0006370 7-methylguanosine mRNA capping biological_process
GO:0006397 mRNA processing biological_process
GO:0080009 mRNA methylation biological_process
GO:0032259 methylation biological_process
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0004483 mRNA (nucleoside-2'-O-)-methyltransferase activity molecular_function
GO:0016740 transferase activity molecular_function
GO:0008168 methyltransferase activity molecular_function
GO:0003676 nucleic acid binding molecular_function

KEGG:

id description
ko03019 Messenger RNA biogenesis

ZFIN:

id description
ZDB-GENE-040426-696 Predicted to enable mRNA (nucleoside-2'-O-)-methyltransferase activity. Predicted to be involved in 7-methylguanosine mRNA capping and cap1 mRNA methylation. Predicted to act upstream of or within mRNA processing and methylation. Predicted to be active in cytoplasm and nucleus. Orthologous to human CMTR1 (cap methyltransferase 1).

Ensembl:

ensembl_id ENSDART00000049373

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045063 lncRNA downstream 159691 35200692 ~ 35203084 (-) True XLOC_022518
TCONS_00044744 lncRNA downstream 594624 34767321 ~ 34768151 (-) True XLOC_022515
TCONS_00044397 lncRNA downstream 1598500 33761148 ~ 33764275 (-) False XLOC_022511
TCONS_00044394 lncRNA downstream 1612455 33747413 ~ 33750320 (-) True XLOC_022510
TCONS_00044386 lncRNA downstream 1626850 33731459 ~ 33735925 (-) False XLOC_022509
TCONS_00045064 lncRNA upstream 143489 35540360 ~ 35549662 (-) False XLOC_022523
TCONS_00045065 lncRNA upstream 266981 35663852 ~ 35665582 (-) False XLOC_022525
TCONS_00045066 lncRNA upstream 266981 35663852 ~ 35669221 (-) True XLOC_022525
TCONS_00044436 lncRNA upstream 623925 36020796 ~ 36051826 (-) True XLOC_022532
TCONS_00044437 lncRNA upstream 684554 36081425 ~ 36088234 (-) True XLOC_022533
TCONS_00044410 mRNA downstream 15037 35244378 ~ 35347738 (-) False XLOC_022519
TCONS_00044411 mRNA downstream 15061 35259878 ~ 35347714 (-) True XLOC_022519
TCONS_00044408 mRNA downstream 166867 35187683 ~ 35195908 (-) True XLOC_022517
TCONS_00044405 mRNA downstream 280281 35027753 ~ 35082494 (-) False XLOC_022516
TCONS_00044417 mRNA upstream 71963 35468834 ~ 35483200 (-) False XLOC_022521
TCONS_00044418 mRNA upstream 72893 35469764 ~ 35483310 (-) False XLOC_022521
TCONS_00044419 mRNA upstream 83043 35479914 ~ 35483163 (-) True XLOC_022521
TCONS_00044420 mRNA upstream 89166 35486037 ~ 35491587 (-) True XLOC_022522
TCONS_00044421 mRNA upstream 148193 35545064 ~ 35547613 (-) False XLOC_022523
TCONS_00044409 other downstream 106330 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044402 other downstream 1376410 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044400 other downstream 1393787 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044391 other downstream 1618004 33739477 ~ 33744771 (-) False XLOC_022510
TCONS_00044369 other downstream 2061356 33301304 ~ 33301419 (-) True XLOC_022500
TCONS_00044432 other upstream 467855 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044435 other upstream 601676 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044457 other upstream 925139 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044460 other upstream 1016827 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044467 other upstream 1113126 36509997 ~ 36510119 (-) True XLOC_022543

Expression Profile

//

Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_02708472_02723568.mRNA True 2874 mRNA 0.48 21 CI01000001 2708472 ~ 2724009 (+)