RNA id: TCONS_00044408


Basic Information

Item Value
RNA id TCONS_00044408
length 2321
RNA type mRNA
GC content 0.49
exon number 3
gene id XLOC_022517
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35187683 ~ 35195908 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GACACAATCGTGTGACAGCAGCGTATACTCCAGACAGGAGAGCATGATCGGCCATGAGACGCCTCATGTCTCAAGGGCACATTTAACGGCTAATGAAGCATTCTTCAGCACGGAGAAACGGATTCTACTGGCGCTTTAAGCACCCCGGATTAATGCGAGTCATTTAGAGAGCCAGAGAAAGGCCTGAATCATTCACAGCAGGGAACTGTTCAAGTGGCCACCTTGCTTTGGACAGGCATTAGCCAGGAATGGTGGATCACTTGCGTCTTGATGAAGAGACTTTCTTTCCTTACACTTGTTTGCTGCCAGCCCATAACCCATCGGATATGGTGACAGACGAGGGGGTGTACCATATGCTTCCATCCCCATTCTCAGACGATAACCTGAGTGACTCATCTAGCCCACGTTCCTGTTCCAGCCCTGAGTCTCAGGGGTTGGGCTCTAGTTGTGGGAGTAACTCGAGTGGAGAGAGCCAAGATGGCCTCCTTGACTTCCTTCACTCTCAGTCCCTAACCTTGAGCCAAAACTCCTCAACCTCGATATCTCCCATGGTTCCTCCTGTCCTTCCAATGGGGCTGGCTTGGGAGTCACGACGGGACCGTGCCAAAGAGGAGTGCTTTGAGTTCCCTGTTTTCCCTGGAGACTTGGAGGACCATGCGGGGCTACTGTTTCAGCCCACTCTGGAGGAGATTGAGGAATTCCTGGAAGAAAACATGGAGGTGGTGGCTTTGAAGGAGGAAGCTGGCGAGGGTCTAGTAACCTGTGCAAGCATCCAAGGAGCTACAGAACCTCGGGCTCAAAGCTTAGACCAAACAGTGCCTGTCTTGAGTGACATAGTTGATGCCAACTCTGATCCCAAAAGTCCCACAGTAGGGACCTCAACAAATCCTCAGAGCTCGCTGAAAAGGGAGGACTCTTCTGGGAAGGTTGTGATGGTGGAGAGTCCAAGCATGCCTGTGATTCTACAGCTTCAGCCCGTTCAAGTGAAACAGGAATCAAGCCCTAAAACCCCATCCCCCTCGTCGCCAACACCACCTGCTTCAGACATCAAAATAGCCCAGCTCCTCGTCAACATCCAGGGTCAAACCTTCGCCCTGGTTCCTCAGGTGATCCCGCCAGCCAGCCTTAACAATTCTTCCTCCAAGTTTGTCCGCATTGCCCCGGTTCCTATTGCCGCTAAGCCCTTGGGTCTTGGGGAGAACGGGACAGGTGATGGCCAGGGCACAGGGCTTGTAGTTGGAGGTCATAAATTCCAGAAGAGCTTGGTTGCTGATCTTATAAAAATGCACAAGTGTACTTTTCCTGGCTGTGCCAAGATGTACACCAAAAGCAGCCACCTAAAGGCCCACCTGAGGAGACACACGGGCGAGAAACCATTCGCATGCACTTGGCCTGGTTGTGACTGGAGATTCTCCCGGTCGGACGAGCTATCACGGCATCGCCGGTCTCACTCTGGAGTGAAGCCCTACCAGTGCCCCGTCTGTGAGAAGAAATTTGCCCGCAGCGATCACCTGTCCAAACACATCAAAGTCCATCGCTTTCCACGAAGCAGCAGGACAGCGCGCACTGCACACTGACCCCGCAACACCCCCACCGTGGAGACACAGAGATAGAAAGAGCAAACCAACCAACGAAAGACTTGTGGTACTGTGATAATTTATTACTTGAGGCTCGGATGAGCTGAAGAAGAGTTTGTTTTGAAACTGTTACTTGACTCGTCGGCCTCACAGATGTCGTAAGATTCGTAGATTGTATTTTTGTAGCGTTCGAcgattgttttttatgttttcgaGAGCAAATGTAACATTCaaagcatttttgtttgatgtaTGAATTGTTGATGTATCTGCCCGTCATCAACATTCCTTGTTAATATCATGGTAAAGTTGCTTCTTTTTGCCAACATAACGTGTTTAGCTTCTCTAAaccaaaaaatcaaacaaacaaacaaacaaactcgaGTTCATTTGAACTACTGATCATTGGTACCTAGCcagcaccttgatgtcaaaactacttcaaaaacacattaaaaaaccaACACAGGCGCATTGTGGATACATACCCGTGTCtgcatttctgaagagcgcaaattatgcagccagagGTACCTCtgactgcatttcgtctttaaaatgaacgcaaCGGATTGGTATGACACCGTCGATGGCTTCTGTTCACTTTTGGACATTTTTtccagtgttaccagtttgcccagtagcttgaTGCATACATTGGTGAACTTAAAGCACTGAGCAGAGTTGCCTGCTATGTCAAGTTTTAGAATGGTTttagaaaccaggtaaaacaaaagcaaaaaa

Function

GO:

id name namespace
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0046872 metal ion binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function

KEGG:

id description
ko03000 Transcription factors

ZFIN:

id description
ZDB-GENE-030131-7844 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Is expressed in several structures, including alar plate midbrain region; epidermal cell; epidermis; median fin fold; and midbrain. Orthologous to human KLF15 (Kruppel like factor 15).

Ensembl:

ensembl_id ENSDART00000122429

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00044744 lncRNA downstream 419532 34767321 ~ 34768151 (-) True XLOC_022515
TCONS_00044397 lncRNA downstream 1423408 33761148 ~ 33764275 (-) False XLOC_022511
TCONS_00044394 lncRNA downstream 1437363 33747413 ~ 33750320 (-) True XLOC_022510
TCONS_00044385 lncRNA downstream 1448572 33731189 ~ 33739111 (-) False XLOC_022509
TCONS_00045063 lncRNA upstream 4784 35200692 ~ 35203084 (-) True XLOC_022518
TCONS_00044416 lncRNA upstream 197199 35393107 ~ 35396760 (-) True XLOC_022520
TCONS_00045064 lncRNA upstream 344452 35540360 ~ 35549662 (-) False XLOC_022523
TCONS_00045065 lncRNA upstream 467944 35663852 ~ 35665582 (-) False XLOC_022525
TCONS_00045066 lncRNA upstream 467944 35663852 ~ 35669221 (-) True XLOC_022525
TCONS_00044405 mRNA downstream 105189 35027753 ~ 35082494 (-) False XLOC_022516
TCONS_00044403 mRNA downstream 117878 35027177 ~ 35069805 (-) False XLOC_022516
TCONS_00044404 mRNA downstream 120735 35027753 ~ 35066948 (-) False XLOC_022516
TCONS_00044407 mRNA downstream 120867 35051159 ~ 35066816 (-) True XLOC_022516
TCONS_00044406 mRNA downstream 122898 35051157 ~ 35064785 (-) False XLOC_022516
TCONS_00044410 mRNA upstream 48470 35244378 ~ 35347738 (-) False XLOC_022519
TCONS_00044411 mRNA upstream 63970 35259878 ~ 35347714 (-) True XLOC_022519
TCONS_00044413 mRNA upstream 165816 35361724 ~ 35396978 (-) False XLOC_022520
TCONS_00044412 mRNA upstream 165816 35361724 ~ 35396978 (-) False XLOC_022520
TCONS_00044414 mRNA upstream 166867 35362775 ~ 35396871 (-) False XLOC_022520
TCONS_00044402 other downstream 1201318 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044400 other downstream 1218695 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044391 other downstream 1442912 33739477 ~ 33744771 (-) False XLOC_022510
TCONS_00044369 other downstream 1886264 33301304 ~ 33301419 (-) True XLOC_022500
TCONS_00044368 other downstream 1968555 33219005 ~ 33219128 (-) True XLOC_022498
TCONS_00044409 other upstream 48470 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044432 other upstream 668818 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044435 other upstream 802639 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044457 other upstream 1126102 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044460 other upstream 1217790 36413698 ~ 36418022 (-) False XLOC_022539

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000001_02787356_02792545.mRNA True 4085 mRNA 0.41 2 CI01000001 2785324 ~ 2793251 (+)