RNA id: TCONS_00045065


Basic Information

Item Value
RNA id TCONS_00045065
length 1528
lncRNA type antisense_over
GC content 0.33
exon number 2
gene id XLOC_022525
representative False

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 35663852 ~ 35669221 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

AAAATGTTTTACTGTCGTGTTATTCTGCGTTAAtcaaaaaatacatgaaaaaaataaatcactgacAAAACACACCAGTTCCACTAAAGACTGGTGGAAACATGTTTCATCAGATTACATTTCTGTCCATCAAAGGGTCTGAGAGGCCATTTACAAGTCAGTTACATTATAAAATGCCAAAAATAGACACATATGAGATAGCATTTGGGTTTGTGTTTAGAAAACAAGAACAGAAATAAAAGGGTGAAACCAGTTTAACAAACATGAATGGTCAGCATGCTCCCTAATGGCTCTACAAGTGTCAAGTTGAGGGTTTAAATGCAGGCATATAACAAACATGAACCTAAAAGACCATTTCAGACATTATATTTAAGACGATATTTCATCCAAAACagatttctgaagaatgctgggatCCAATAACCATCAAAGCCTAATGATTAAAACGTTTTAGCTAACTAAATGATGACAATATTAATTTTCGGATGAAGTATCCCTATAAAACAAAGGTACGCTGAACTAAAGTATCAAGTTCAATATGAATCATTCATAAATACAGAAAGAATGAATGTGATTTGTAAATAAACCAATATTCGTCACACTTCTTGTACTTTCAATCATTTCTGTCCATCACAGATTCATTTAAGTCTGAGGGCCATTTATAGGTCAGTTACATTAGGATAAAACTGTCTATACatgaaaaaaactgaactgaaataaataaaaggatGTAGAGAGTACAACATACTGCTGTGTATAGTGTATTATAAATGAGTGTGATATTCTACAACCATTTAAAACAATGACTGCATCTGCCTCGGAGGCTAGAACTGTAAGTCTAGTGAACATACCTTCCAAAAAACGacttgcttaatttttttttttttttaggtttttttcttttaaatagtcGTCAATTTTCACCATTAATAGAAGTTGAAAGCAAAAATAtttaccaaacaaaacaaaaatgaaactaTTCGTGAATTTAGGAACACATTATGATGCGAATATTGgtgatttgtgtttgtgtgcgtgtccaTTTCTCATGACACACATCAAGTAAATACAGACTGGGAAGTAGGTTTACTTacaacagtataaaaataaatccAGATCTCGTCTGGAGACGCATTCAAGCAACGACTGCTAATAACTATGGATTTAAAAGGCTAATAATAAATACCATACTCCATAAAAAAGACACATATATATTGTTAGCGAACATTTTCCATTTTTGCATTCAaggttacacttttttttttttaaagaggaccGCGAGTCCCTCTCATTCAGTAATACATTACCCTTAATTCCATTATGCTTTTCTGTTAGCGCGGATATAAAAGTGAACGACATCAAAAAATAGTAGTatgtacaattattttttttctcgtttcaataaataacatttttgccttttttttgcaatattttgttctACTTTAACATTATTGCCACAGATGGGGTGTTGTGAACGTACTCGcttgcgcacgcacacacacacaaagacgcaAGACAACATTAG

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045064 lncRNA downstream 114190 35540360 ~ 35549662 (-) False XLOC_022523
TCONS_00044416 lncRNA downstream 267092 35393107 ~ 35396760 (-) True XLOC_022520
TCONS_00045063 lncRNA downstream 460768 35200692 ~ 35203084 (-) True XLOC_022518
TCONS_00044744 lncRNA downstream 895701 34767321 ~ 34768151 (-) True XLOC_022515
TCONS_00044397 lncRNA downstream 1899577 33761148 ~ 33764275 (-) False XLOC_022511
TCONS_00044436 lncRNA upstream 355214 36020796 ~ 36051826 (-) True XLOC_022532
TCONS_00044437 lncRNA upstream 415843 36081425 ~ 36088234 (-) True XLOC_022533
TCONS_00044438 lncRNA upstream 426764 36092346 ~ 36095368 (-) True XLOC_022534
TCONS_00044440 lncRNA upstream 444632 36110214 ~ 36228277 (-) False XLOC_022535
TCONS_00044439 lncRNA upstream 444632 36110214 ~ 36249991 (-) False XLOC_022535
TCONS_00044423 mRNA downstream 14852 35642061 ~ 35649000 (-) True XLOC_022524
TCONS_00044421 mRNA downstream 116239 35545064 ~ 35547613 (-) False XLOC_022523
TCONS_00044422 mRNA downstream 118298 35545078 ~ 35545554 (-) True XLOC_022523
TCONS_00044420 mRNA downstream 172265 35486037 ~ 35491587 (-) True XLOC_022522
TCONS_00044418 mRNA downstream 180542 35469764 ~ 35483310 (-) False XLOC_022521
TCONS_00044424 mRNA upstream 25075 35690657 ~ 35694171 (-) False XLOC_022526
TCONS_00044425 mRNA upstream 25279 35690861 ~ 35694461 (-) True XLOC_022526
TCONS_00044426 mRNA upstream 56025 35721607 ~ 35756115 (-) True XLOC_022527
TCONS_00044427 mRNA upstream 121360 35786942 ~ 35790260 (-) False XLOC_022528
TCONS_00044428 mRNA upstream 123458 35789040 ~ 35790256 (-) False XLOC_022528
TCONS_00044409 other downstream 407407 35244378 ~ 35256445 (-) False XLOC_022519
TCONS_00044402 other downstream 1677487 33978425 ~ 33986365 (-) True XLOC_022514
TCONS_00044400 other downstream 1694864 33968866 ~ 33968988 (-) True XLOC_022513
TCONS_00044391 other downstream 1919081 33739477 ~ 33744771 (-) False XLOC_022510
TCONS_00044369 other downstream 2362433 33301304 ~ 33301419 (-) True XLOC_022500
TCONS_00044432 other upstream 199144 35864726 ~ 35864853 (-) True XLOC_022530
TCONS_00044435 other upstream 332965 35998547 ~ 35999332 (-) True XLOC_022531
TCONS_00044457 other upstream 656428 36322010 ~ 36322124 (-) True XLOC_022538
TCONS_00044460 other upstream 748116 36413698 ~ 36418022 (-) False XLOC_022539
TCONS_00044467 other upstream 844415 36509997 ~ 36510119 (-) True XLOC_022543

Expression Profile

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