RNA id: TCONS_00044536


Basic Information

Item Value
RNA id TCONS_00044536
length 1030
RNA type mRNA
GC content 0.46
exon number 4
gene id XLOC_022603
representative True

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 40810286 ~ 40812119 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CAGCAAAGCTTAAGACCAAACATGATGCACCACAGCGGTTGAGTGTCCCAGATGCAAGCACTCCTGATGTGACTGACCCAACAGGGCCTTTGAACACCAGTGTGACCGATGAGGATGCCGTGGATTATTCTCCTGAAACCCCTGAAGATCACCGGCCAACAGGAATCAAAGAGTGGATGATGAATAAACTTTCGGAATTCCACTGCAAGGATACAAGTCCTAGACACGATCTTGCAAAGCCGGGTCCGAGCAGTTTGCCTTCTCAAAAACAGCTGGAAGAAATTTTCGACTTTGAGAAGCTTGCAGAGTTATTACAAGTAGAAGACACCGTGAACAAATGTAAACTGCCCCTGTCACCATTTACGGAGGTCTGGCGCAATGTCTACATTGGAGATGAAGAGACAGCAAGAAATCGACGCAAACTGATGGAATTGGGAGTCACCCATATCCTAAATGCAGCAGCGCCGAAGATGGCCTGGTTGGGAAAACTAAGTAAGAGTGGAGTAAACGGAAAGATCCTTACAGGACCGGAATATTATGAAGGCATGGACATCAAATATTGCGGCTTGCCTACAACATACGACCAGTCCAGAATCATCAGATACTTCTGGCCAGCTGGCAAGTTCATCAAAAAGGCCCTGAGAAACCCAGACAATGTCCTGTTCATTCACTGCAGGCATGGTGTCAGTCACGCGCCAACATTGTTTGTAGCATATCTGATGATGTACTACCAAATACCTCTGGAGGAAGCCTTGAGTTATGTCACCAGGGCGAGGCGCATCAGGCTCTTCACATCCTTTCTGCTCCAGTTGTCGTTACTTGAAcccaagaaaaagaaagaaatccaACAGCAAAAAGGCATAGTAATATACAACTGAATAAACAACACTGCAcagaaaggtcgctggtttgagtcccacaCAGAAAGGCCTTCTGGtctagccaggactcaaaccatcGACCCTAGCCcaaagctatttttatttttcagctttcttttttAATCTCTGGATATatgtgcactttaaaa

Function

GO: NA

KEGG: NA

Ensembl:

ensembl_id ENSDART00000140492

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00045118 lncRNA downstream 304173 40459952 ~ 40506113 (-) True XLOC_022594
TCONS_00044522 lncRNA downstream 304183 40459952 ~ 40506103 (-) False XLOC_022594
TCONS_00045117 lncRNA downstream 304195 40459952 ~ 40506091 (-) False XLOC_022594
TCONS_00045116 lncRNA downstream 329872 40459952 ~ 40480414 (-) False XLOC_022594
TCONS_00045115 lncRNA downstream 333387 40459952 ~ 40476899 (-) False XLOC_022594
TCONS_00045120 lncRNA upstream 184332 40996451 ~ 40999225 (-) False XLOC_022607
TCONS_00045119 lncRNA upstream 184332 40996451 ~ 40999225 (-) True XLOC_022607
TCONS_00045121 lncRNA upstream 491393 41303512 ~ 41305045 (-) True XLOC_022609
TCONS_00045122 lncRNA upstream 800650 41612769 ~ 41618019 (-) True XLOC_022612
TCONS_00044755 lncRNA upstream 845061 41657180 ~ 41659516 (-) True XLOC_022614
TCONS_00044535 mRNA downstream 13294 40792319 ~ 40796992 (-) True XLOC_022602
TCONS_00044534 mRNA downstream 18158 40791433 ~ 40792128 (-) True XLOC_022601
TCONS_00044533 mRNA downstream 20090 40788357 ~ 40790196 (-) True XLOC_022598
TCONS_00044530 mRNA downstream 21353 40772329 ~ 40788933 (-) False XLOC_022598
TCONS_00044537 mRNA upstream 1231 40813350 ~ 40814080 (-) True XLOC_022604
TCONS_00044538 mRNA upstream 3255 40815374 ~ 40817792 (-) True XLOC_022605
TCONS_00044539 mRNA upstream 60569 40872688 ~ 40895168 (-) True XLOC_022606
TCONS_00044541 mRNA upstream 500965 41313084 ~ 41585776 (-) True XLOC_022610
TCONS_00044543 mRNA upstream 817384 41629503 ~ 41651759 (-) True XLOC_022613
TCONS_00044527 other downstream 217352 40592817 ~ 40592934 (-) True XLOC_022596
TCONS_00044525 other downstream 274246 40528661 ~ 40536040 (-) False XLOC_022595
TCONS_00044516 other downstream 857880 39951553 ~ 39952406 (-) True XLOC_022588
TCONS_00044515 other downstream 864708 39944652 ~ 39945578 (-) True XLOC_022587
TCONS_00044508 other downstream 1143828 39641964 ~ 39666458 (-) True XLOC_022580
TCONS_00044540 other upstream 475214 41287333 ~ 41287449 (-) True XLOC_022608
TCONS_00044542 other upstream 533625 41345744 ~ 41345858 (-) True XLOC_022611
TCONS_00044546 other upstream 942371 41754490 ~ 41762926 (-) True XLOC_022615
TCONS_00044552 other upstream 1591445 42403564 ~ 42403680 (-) True XLOC_022623
TCONS_00044554 other upstream 1696615 42508734 ~ 42515002 (-) True XLOC_022624

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
rainbow trout (Oncorhynchus mykiss) TU117706 True 316 lncRNA 0.42 1 NC_048566.1 967407 ~ 967722 (-)
tiger barb (Puntius tetrazona) TU117706 True 263 TUCP 0.48 2 NC_056709.1 6096133 ~ 6096480 (-)