RNA id: TU117706


Basic Information

Item Value
RNA id TU117706
length 316
lncRNA type inter_gene
GC content 0.42
exon number 1
gene id G104666
representative True

Chromosome Information

Item Value
chromosome id NC_048566.1
NCBI id CM023220.2
chromosome length 103806877
location 967407 ~ 967722 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

ccaccagtacagagcttgctcacgaatggcagcaggcaggtgtgagtgcatctgcacgcacagtgaggcgaagacttttggaggatggcctggtgtcaagaagggcagcaaagaagccacttctctccaggaaaaacatcagggacagactgatattctgcaaaaggtacagggattggactgctgaggactggggtaaagtcattttctctgatgaatcccctttccaattgtttggggcatccggaacaaagcttgtccagagaagacaaggtgagcgctaccatcagtcctgtgtcatgccaacagtaaactA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU117702 lncRNA downstream 2348 962906 ~ 965059 (-) True G104662
TU117695 lncRNA downstream 13523 953674 ~ 953884 (-) True G104655
TU117683 lncRNA downstream 28503 938002 ~ 938904 (-) True G104644
TU117678 lncRNA downstream 34653 932187 ~ 932754 (-) True G104639
TU117671 lncRNA downstream 43060 917291 ~ 924347 (-) True G104634
TU117719 lncRNA upstream 4913 972635 ~ 974741 (-) False G104672
TU117717 lncRNA upstream 6183 973905 ~ 975873 (-) True G104672
TU117742 lncRNA upstream 38530 1006252 ~ 1006927 (-) True G104689
TU117744 lncRNA upstream 41159 1008881 ~ 1009116 (-) True G104691
TU117746 lncRNA upstream 42456 1010178 ~ 1011679 (-) False G104693
XM_036934934.1 mRNA downstream 61989 879818 ~ 905418 (-) True azi2
XM_036934936.1 mRNA downstream 61992 879818 ~ 905415 (-) False azi2
NM_001281390.1 mRNA downstream 154217 806150 ~ 813190 (-) True eomesb
XM_036934898.1 mRNA downstream 176536 727654 ~ 790871 (-) False LOC110516483
XR_005034579.1 mRNA upstream 347942 1315664 ~ 1316080 (-) False LOC118937319
XR_005034578.1 mRNA upstream 347942 1315664 ~ 1316245 (-) False LOC118937319
XM_036935016.1 mRNA upstream 459529 1427251 ~ 1457133 (-) True LOC110515934
XM_036935030.1 mRNA upstream 605680 1573402 ~ 1683489 (-) False LOC110515405
XM_021593425.2 mRNA upstream 735229 1702951 ~ 1704863 (-) True kiaa1143
TU118548 other upstream 366264 1333986 ~ 1342335 (-) False G105220
TU118550 other upstream 366264 1333986 ~ 1342335 (-) False G105220
TU118552 other upstream 366264 1333986 ~ 1342335 (-) True G105220
TU118668 other upstream 573008 1540730 ~ 1541706 (-) True G105285
TU118629 other upstream 626059 1593781 ~ 1619036 (-) False LOC110515405

Expression Profile