RNA id: TU1553687


Basic Information

Item Value
RNA id TU1553687
length 2220
RNA type TUCP
GC content 0.41
exon number 2
gene id G1359321
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 27357284 ~ 27359562 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CACAGTTACAGTCTATGTTTTTTCATTTGGGGCGGAAACTGATGTCACATGACCTGATGTATGGCAGGCCACCCCAAAGACCAGTCCAATGCTGATAACATCTTTTGCCAAGTTTTGCTTTAAATGTCACAAAAAGATGTCCTCAACCAACCGGTTCTCCTGCTTAGTCCAGGAGTTCCAAGCATTTGGTCTCAGTGCAAACAAACAAGAGTGAAGGGGCTGAAAATGTAAGAATTTCCACATTACATCAAATAAACTATAACGATGCTATAATGAAGTAGAACAGCATTTACCTTACAGTGTAAATGAGTTTTCCTTCCAGGTCTAAGTGTGAAAAGAAATCTATTCAGAAAAgcacactggaactgtgtgttcAGATAAGAATATATGATGTGGAACAAACATGGTGCTCTTTGTGTAAAATAAGCCATCACGTCAGATCTATTCATGACAATTCTATCTGCAACCGTTCCACAACATCCACGACTATTTTGAATGTAGCCCAGAGAAGAGAACTGGGGAACACGAAGATAATTTATGATGAAAGACTATAAAATGGTGGAGATTTTAGCGTTAGTCTTTTTTCTTGTTCTTTACAATGGGATTCTCTCATGCATGTTTGCACGTTTTAACGTTTGACTCCTAACCCATGCACATTTTTTTCCAGTACATTGTTTGTTACACACAAATGCTACTTTGCCATTTTAAAGGAAAgtttcacccattttgaatgtttttgtgcatctctgagcgATGTTCTATCGATTACCAGGGTCTTTTCATGTTATCTTGTGTATCTGAGCTATTTCCGTTCAAGCAGGCAGGAATTTGGCCGGTAAGACATAGCATTGCAATAAAGCCGCTCTCAttacactggaagttaataggaatatGACTTTCAGATCGCGAAAACATCTATCATACGTCAGATTTCAATACTTCCCGATGTCATAACACAAGGGGTAGTCTTCTCTTAAATTAACCACTGATCATAATTTAGCAAAAATCCTACCTCGAGAAATGTGTAATTTCAGAGGGTCCAGCACATTTCTCATATTTGTCTGCCTCTTCAGTCCAGGGAGTATTGCATGGTGCCGTTGCGAATGTCAGACCTCTGTGAGGCACATCGATCTGCATGTTGAACATGGTGATattgtagactcctaaattgatagtgcagtttCTTTAGGCGAATTTACAGATAACTAACTAGCCAGCCCATAGAGACCATTCCATTGGGGGTTTTGTAgtcgacttgagctgcaacagatttccacaacgATTTCCACCTCTTGCTACCAACCTTATTATaacgacaacatttaaaatatTGTTCTCACATAGTGTTCTTTTAACACTGTAAATTATAAGAATTAGCGGTTTTGGGTAGATTTTTCCTTTAAGAACAGTAATAGTAAGAACAATAATTATCTAACACTTATACAGGGTGGTAAATTAACACCAACCACATGCTGGTAGTTTGGCATTGCCTGGAATAATGTCTATTCTTACCAGACACATTGGCGGGTGGTCATACAGAGCATTTGAGTGCATTTTTCTTTTCTAAATCCAAAGcccacatgtaaaaaaaaaacatttaagtgTGAATATGCGTGTCAACTCTGGAAAATAGAATCTCAACGCTACAGTGGTGAAAGCATGATGGGGTACAGTCTTTTCTGTGATTTACATTTTTTCAGGGGGAAATGTGGCTGGTGAAAAATGTGAGTGGCTGGTAAAATTCGGGCATCCACCAACCACTACGTCTGGTGGACCAAAAAGTTAATTTCacaccctgcacacacacacacagagtcacactcAAAACCAACACAGAGTTATTCATTCAAATGAGTACACCTGACAAGAAGGCTGGGGAGCAAGGAAGGGGGGGTTCTTATCATAAAGTAACTGCTGTTTGCAAAGCATTCACAGGGATCCAGGAGTGTTCGGTTAAGGTGAAGGTGGTTGGTAGTAACCTGGTTTGGTTACACATGCCCCATCCCATCTTAACCCAAAATGATGGTACATATCCTCTACCCTGCCACCTATATACCTCCTTGGCTGTTTTTGTAGACAGCCCTCTCCCATCCCCGatccctccatgcctccctccatCACTGCACAGTCTGTTCGTTGgcagtgctgccagagtcttgGGGTTTCATGACGTCAGGGAGCTCTGGAGGGCTGGAGAATGCCCCCACCTGCAGCTGCTCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1553633 lncRNA downstream 16029 27339050 ~ 27341255 (-) False G1359274
TU1553634 lncRNA downstream 16029 27339050 ~ 27341255 (-) True G1359274
TU1553636 lncRNA downstream 20846 27334668 ~ 27336438 (-) True G1359276
TU1553591 lncRNA downstream 158886 27198196 ~ 27198398 (-) True G1359243
TU1553590 lncRNA downstream 159185 27197751 ~ 27198099 (-) True G1359242
TU1553746 lncRNA upstream 91647 27451209 ~ 27451997 (-) True G1359378
TU1553775 lncRNA upstream 140593 27500155 ~ 27500884 (-) True G1359406
TU1554075 lncRNA upstream 643203 28002765 ~ 28003972 (-) True prrt2
TU1554121 lncRNA upstream 691983 28051545 ~ 28072528 (-) True G1359717
TU1554153 lncRNA upstream 773835 28133397 ~ 28133627 (-) True G1359748
XR_002468891.2 mRNA downstream 22713 27320852 ~ 27334571 (-) True LOC110491762
XM_021565465.2 mRNA downstream 49404 27297334 ~ 27307880 (-) True pkmyt1
XM_036946635.1 mRNA downstream 76725 27266606 ~ 27280559 (-) False LOC110491756
XM_036946634.1 mRNA downstream 76728 27266606 ~ 27280556 (-) False LOC110491756
XM_021565446.2 mRNA downstream 76734 27269450 ~ 27280550 (-) False LOC110491756
XM_021565502.2 mRNA upstream 145743 27505305 ~ 27525446 (-) False pelo
XM_036946677.1 mRNA upstream 145743 27505305 ~ 27525446 (-) True pelo
XM_021565503.2 mRNA upstream 286531 27646093 ~ 27661310 (-) False atp2a1l
XM_021565504.2 mRNA upstream 286533 27646095 ~ 27661310 (-) True atp2a1l
XM_021565508.2 mRNA upstream 309285 27668847 ~ 27687988 (-) True ppp1cab
TU1553460 other downstream 243883 27111783 ~ 27113401 (-) False G1359119
TU1553462 other downstream 243883 27112234 ~ 27113401 (-) True G1359119
TU1552016 other downstream 613829 26729304 ~ 26743455 (-) False LOC110491745
TU1552022 other downstream 629456 26727295 ~ 26727828 (-) True G1357833
TU1549855 other downstream 2468640 24884866 ~ 24888644 (-) True LOC110491708
TU1553783 other upstream 167601 27527163 ~ 27528137 (-) True G1359412
TU1554168 other upstream 803901 28163463 ~ 28164227 (-) True G1359763
TU1554186 other upstream 818153 28177715 ~ 28180940 (-) True taok2b
TU1555797 other upstream 2137551 29497113 ~ 29497555 (-) True G1361290
TU1556170 other upstream 2564309 29923871 ~ 29925154 (-) True G1361619

Expression Profile