RNA id: TU1556170


Basic Information

Item Value
RNA id TU1556170
length 534
RNA type TUCP
GC content 0.51
exon number 4
gene id G1361619
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29923871 ~ 29925154 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

CAAAATATGGCTTTTAGCTCACCACTTCATCCTTtattgttaaataaaaaaagcaTTATCAATCGTTCTGTTGGAGGATCAACAGAGCCAAGAAATAGAGAGCCAGGTAGGCCAGATTTAGTGGCTGTAAATCAGAGGTCAGACTCATGTGGCCCGGGTGGTTGTGGTGGCGGCTGTGGCATTGGTGCTGGCTCCACTCATGGCCATCTTCTTCAGCGTTCTGTTCCTCCTCAAACTTCTGGATGCGAAACTCCTGCTCAGTCATGTCCAGGAACCCTGCCAGCTTGGCCACAGGCATGGTGGTGTAGAGCTTCAGGAACTGCGGATGGTAGAGAGCTGCGCCTGTTGCTGCACCTCCTCAGCGAACACCTTGAGCTGCTGCTGGAAGGGCTCCTTGTGGTAGTTGGGGAGCACATTATCGTAGTTGGGCACCACCGGGGACAGGAACTTGGGACAGGCAAAGCTGAAGAGCTCCTCAAACACCTGCAGGTCTCTGAGGTCACAAAGTCATGTCAGTCAAGTCTCAAACACCAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1556172 lncRNA downstream 15324 29907345 ~ 29908547 (-) True G1361620
TU1556198 lncRNA downstream 19767 29903881 ~ 29904104 (-) True G1361645
TU1556151 lncRNA downstream 50241 29855522 ~ 29873630 (-) True LOC110492894
TU1556050 lncRNA downstream 104268 29819347 ~ 29819603 (-) True G1361508
TU1556005 lncRNA downstream 105014 29755523 ~ 29818857 (-) True G1361468
TU1556210 lncRNA upstream 2718 29927872 ~ 29928175 (-) True G1361657
TU1556211 lncRNA upstream 4691 29929845 ~ 29930045 (-) True G1361658
TU1556218 lncRNA upstream 12160 29937314 ~ 29937929 (-) True G1361665
TU1556225 lncRNA upstream 18180 29943334 ~ 29943623 (-) True G1361672
TU1556227 lncRNA upstream 19296 29944450 ~ 29944890 (-) True G1361674
XR_005036503.1 mRNA downstream 50289 29855177 ~ 29873582 (-) False LOC110492894
XR_002469089.2 mRNA downstream 60798 29855177 ~ 29863073 (-) False LOC110492894
XM_021565563.2 mRNA downstream 221278 29674817 ~ 29702593 (-) True LOC110491798
XR_002468900.2 mRNA downstream 500218 29412470 ~ 29423653 (-) False LOC110491794
XR_002468901.2 mRNA downstream 500218 29412470 ~ 29423653 (-) False LOC110491794
XM_021567341.2 mRNA upstream 30452 29955606 ~ 30134001 (-) False LOC110492868
XM_036946709.1 mRNA upstream 30452 29955606 ~ 30543872 (-) False LOC110492868
XM_021565574.2 mRNA upstream 999451 30924605 ~ 31019310 (-) False LOC110491806
XM_021565575.2 mRNA upstream 999451 30924605 ~ 31019310 (-) False LOC110491806
XM_021565569.2 mRNA upstream 999451 30924605 ~ 31019311 (-) False LOC110491806
TU1555797 other downstream 426316 29497113 ~ 29497555 (-) True G1361290
TU1554186 other downstream 1742931 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 1759644 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 2395734 27527163 ~ 27528137 (-) True G1359412
TU1553687 other downstream 2564309 27357284 ~ 27359562 (-) True G1359321
TU1558520 other upstream 1714283 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 1960595 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 2093640 32018794 ~ 32019498 (-) True G1364348
TU1559908 other upstream 2709311 32634465 ~ 32635511 (-) False G1365099
TU1559909 other upstream 2709409 32634563 ~ 32635511 (-) True G1365099

Expression Profile