RNA id: XM_021567341.2


Basic Information

Item Value
RNA id XM_021567341.2
length 6707
RNA type mRNA
GC content 0.54
exon number 36
gene id LOC110492868
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29955527 ~ 30543872 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTCACCTCGTTACTGCTATCTCATGGGGAAATTGCAGAAGGTGTCAATCACCATACAGGATGAGAATGACAACAGTCCAGAGTTTGATATCACATCTGATTCATTGGTGGAGATTCCAGAGAACACACCCATCGGGAAGAGAGTGGCTGTGGTGCTTGGGCGTGACAAAGATGCCGGAAAAAATggactgGTGTACTTCAGGCTGGTGGCAGGGAACATGCAGGATGTGTTTGAGATCCGGACAGTGAATCACACCTATGGAGAGATCTACGTCAACTCCCCTCTGGACCGAGAGTCTGTTGACCGCTACCTGCTCAAGGTGCGTGCTATGGACAGCGGTGTGCCTCCCCGCTACAGAGACCTTCCTCTAATCATCAACATCCTGGACGTCAATGATAACACACCCGTCATTGAGAGACAGGTGGGCTACAATGTCAGTATCAGCGAGaatGTGGGAGGCGGTACGTCCGTCCTGCGCGTGGTGGCCACAGACCGTGACATCGGGCCCAACGCCATGCTCTTCTACTACATCACCTCAGGTAACAAGGATCTCACCTTCCGGATGGACCGCATGACCGGTGAGATGGTGACACGACCATCCCCACCTGACCGCGAGCGCCAGCAGGAGTACCGGCTGATCATGATGGTGGAGGACGACGGCACGCCGTCACTATCGTCATCGACTACCATCTACGTGCGTATAGTGGATGAGAACGACAACGCGCCAGAGTTTCCAGAGGAAGAGTATGTGACGGTGCTGAGCGAGGGCCCCAACACCGTGGGTGCCATTATTGCCACGGTAACCGCCATCGACCCAGACGAGGGCCTCAATGGCACCCTGCGATATGCCATCGACCACGGAAACCTGGACATCACCTTCCACATCAATCACACTACCGGACGGATTGTTGCAGTGAAGGAGCTGGACTTTGAGATCAGCAATGGACACTACACACTTATCGTCACAGCAACGGACCAGTGTCCTATCCATGCCCTCCGCCTGACTTCCAGCACCACGGTGTTGGTGAATGTCCTGGATGTGAACGATGTGACCCCCACCTTCACCAAGCCCTATGAGGGGCCCTTTGAGATAACAGAGGGCCAGCCGGGGCCTCGGGTCTGGACCCTCAAGGCCATCGACCAGGACTCTGGGCTCAACGGCAAAGTGGAGTACAGCATCACTGCCGGAGACCCCCAGAaTGAGTTTGTGGTATCTCCAGTGGAGGGAGAGCTGCGTGTGAGGAGAGATGTggagctggacagagagaccacaccCTTCTACAACATCACTGTTATGGCCAAAGACCTGGGCAACCCACCACGCTTCAGCATGGTGGTGGTGGGTGTCCATGTGCTGGACATCAATGACAACGACCCCATGCTGTTGAACCTGCCCCACAACACCAGTGTGAGAGAGGGGGCGTCCATCCACACCTTGGTGACCACGGTCCAAGCACGGGACATGGACAGTGGACGCAATGCCCTGCTCACCTACAACATCACTGCCGGAAACCACGATGGAGCTTTCTACATCAATgacactaCAGGGATGGTGCAGGTGAACAGGCCTCTGGACAGAGAAAGGGTGGGGGAGTACAGACTGACCATCACTGTTAAAGACAACCCTGAGAATCCCCGCATCGCTCGCCGGGACTCAGACATGCTGGTGATCACAGTTCTGGATGATAATGACAACAGGCCCATATTCACACAGACCAGCTACCGGGCTGAGATCACTGAGAACTCCCCCTCAGgCAGTGCTGTGTCAGTGTTGAATGGACCAGTGTTGGCTGAGGACAAAGACATTGGGCCCAACGCTGTGGTCAGATACCGTCTGCTGGGAACAAGACTGGACCTCTTCACTGTGGACTCTGATACAGGTGTAGTTCGTGTGCGACAGAAGGCTCTGTTGGACCGCGAGGCGTTTGTGGAGCCGCGGGTGGAGCTGCTCCTGGTGGGGGAGGATGTGGGAGGACTCAACAGCAGCGTGCCCCTCACTGTGACAATCATGGACCAGAACGACAACCCTCCTGTCTTTAACCCCCCCAGCCTCACTGTGCACCTCCCTGAGAACAGCCCCACTGGTGTGGTGGTGACCCAGCTGTCTGCCAGTGACGCTGATTCAGGCTCTAATGCCTGGCTCCTTTACCGGCTGGAGAGCGGTGCCCAGGACCGCTTCGTAGTTGACTCCCTCTCTGGTGCCGTCCTGGTGGGAAACTCCACCCTTGACCGTGAGGAGCGTGGCTCCTACCGCCTGGTTGTCGTGGCTACTGACCGGGGCACACCCTCATTGTCGGGCACGGCCACCCTGTCGGTCATCCTGGATGATGTCAACGACTCACGACCACGTTTCCTGGAACCCGTGACAACTATTAACATAAACGAGTCTACACCACCGGGTGTGGTGGTGGCAACGCTCGCCGCGAAGGACCCTGACCTACGACCCCGGCTGGAATATTACATAATCTCTGTGGAGGCGAAGGATGATGGAAATAACCCTGTTGTTGGGCTGCAAGAGTCATTCGGCATCGATTTCCACACGGGTGCTGTGTTTGTGCGTAACCCACTCAACAGAGAGCTGGTGGCCACCTTTGAGATTCTTGTGTCGGTGCATGACAACGCCAGTGATGTCATCGACATGTCAGTCAGCGTACCTAATGCGAGACTGATAGTGAACGTGCTGGATGTGAATGACAACGCCCCGCGGTTCCGACCCTTTGGAGTGGCCAACTTCTCAGAGAAGATTCTGGAAGGCGCTCAGCCAGGCACCACTCTGCTGTCCGTGTCAGCTGTGGACCCAGACAAAGGCCCTAACGGACAGGTCATCTACCAGCTGCTACACCTGCCCAGAGGGGACTACCTCAGACTGGAGGACCCATCAActgGTAAGATCATAGCCTACCGGACGGTGGACTTTGAGCAGGTGCAGTGGCTGAACTTCACAGTGAGAGCCCAGGACCACGGCAGTCCACCCAAAGTGGCTGAGCTTCCTGTCTACCTGCGTATAGTAGATGTCAATGATAACAACCCTATCTTTACACAACCCTCTTACCAGAAGCCAGTGTTTGAGGATGTTGACTTGGGCACGGTCATAGTGAGAGTCAGAGCCACAGATGCAGACTCTGGCCTCTTCTCTGTCATCGAGTACAGCCTAGTAGATGGAGAGGGCAAGTTTGGCATCACTCCCTCCACTGGTGACATCTACATTCTGTCTCCACTGGACAGAGAGACTAAAGACCACTTCACCCTGACAGCCATCGCTAGGGACAACCCTGGCGGCAGCCCCAACAACCGACGAGAGAACTCTGTTCAGGTCTTGGTGACCGTTCTGGATGTGAATGACTTCCGTCCGCGTTTCTCAGAGCGGGCCTTTGAGACCAGTGTATTTGAGAATGAGCCCAGTGGGACGTCTGTGATCacactgactgccactgacttGGACGAGGGGCAGAACGGCCTGCTCTCTTACAGCATGCAGGGCCCGGGGGCAGATGCCTTCTCTCTGGATGCTGACACAGGTCTGGTGCGTTCTCTCCGTCTGCTGCAGTCCTTTGAGCACTTTAACTTGACGGTGGTGGCTACAGACCAGGGAAGACCACCCCTCTGGGGCACCGCCACCTtacacatcatcatcatagacGTCAACGACAACAGGCCCATGTTCGTCAGGCCCACCAACGGCACCATCATGCACAtcatggagGAGCAGCCCCCAGGCCTGCTGGTGTATGAGGTGTTTGCGACAGATGGGGATGAAGGGGTGAATGGAGAGGTGCGCTATGCCTTCCTCCAGACAGGAGCTGGGAACAGAGACTGGGATAACTTCCACATTGATGCTATTACAGGAGTCATCACCACCGCCATCAAACTGGACCGAGAGAAGCAAGCCCTGCACAGTCTGATTGTTGTGGCCTATGACCTGGGTCAGCCCGTGCCTTATGAGACCACCCAGCCCTTACAGGTTGCGCTGTTGGACATTGATGACAACGAGCCTGTCTTCTTTAAGCCCCCGcGAGGCAGCCTGCCGTACCAGACTCTGTCTGTGGCAGAGCACTCTACTCCAGGGACAGTAGTGGGTAACGTGACAGGAGCTGTGGACGCAGATGAAGGCTCAAACGCTGTAGTCTACTTCTTCATAGCAGGGGGAGATACTGAAGATAACTTTGGCCTGAGCCCAGGGGGCGTACTGAAGGTGAAGAAGGATCTGGATCGTGAGGACATCTCAGTGTACTCCATCATCATCAAGGCCTCCAGCCACAGAAACTGGGCTCCTGCTAGGGGTCAAAGGTCAGCCTGGGGAAGAGAACTTGACCCCAGCCGTGACCCAACCCTGCAGGAGATCAGAATCTACCTGGAGGACATCAACGACCAGCCACCACGCTTCACCAAGCTAGAGTacactacaggtgtggCTGCTGATGCCAAGGTAGGCTCAGATCTGATTCGGGTACAGGCCATAGACAACGATGTAGGGAACAACAGTCTGGTGCTGTACCATGTCCTGTCCATCCGCTACATTAAGCTCCAGTCCAATGACACTGAGGACATAGGAAACAGCTTCATCATAGgagagacagatgggatcATCCGTACCTATGACCTGTTCACGGCTTACGACCCAGGCTACTTCGTGGTGGAGGTGTTGGCACGGGACCTGGCGGGCCACAGTGACATCGCCATGGTGGGCATCTACATCCTTCGGGACGACCAGCGGGTGAAGATCGTCATCAACGAGATACCAGAGCGGGTACGACAGTTCCAGGAGGAGTTTATCAACCTGCTGTCCAACATCACCGGAGCCATAGTCAACACGGACGATGTGCAGTTCCACGTGGACAAGAAGGGCAGAGTGAACTTTGCCCAGACAGATGTGCTCATACACGTGGTCAACAAGCACACCAACCGCATCCTGGATGTGGAAAAGGTGATTCAGATGATTGATGAGAACAAGGAACAGCTGAAGAACCTTTTCAGGAATTACAACATCCTGGATGTCCAGCCTGCCGTCAGCGGGAGAGCACCTGATGACCTCACTACGCTACAGATGGCCATCATTATCTTAGCTGTGTTGCTCTTCTTGGCAGCCATGTCATTCATCTTCATGAACTGGTACTATCGCACAGTACACAAGAGGAAGCTGAAAGCCATTGTAGCAGGATCCACAGGGAAGCAAGGTCTCATGGACATCCTGGATTTGCCCAACACCAATAAATACTCATTTGAGGGGGCCAACCCTGTGTGGCTAGACCCGTTCTGTCGGAACCTGGAGCTAGCTGCCCAGGCAGAGCATGAAGACGACCTGCCGGAAAACCTCAGTGAGATCACTGACCTGTGGAACAGCCCCGTGCCTACTCACGGAACATTTGGCCGCAAGCCTCAGGCCAAGCCTGAGGATGACCGTTACCTGAGAGCAGCCATCCAGGAGTATGACAACATCGCCAAGCTGGGCCAGATCATGAGGGAGGGGCCCGTTAAGGGCACATTGCTCAATGTGGTTCTGGACGACTACCTGAGGCTCAAAAAGCTCTTTGCAGCCAGACTGGTCACCAAGTCGACTAGCCAAGGCGACCAATCGTCAGTCACAGAGCTGATCCAGAGTGACctggatgatgatgaggatgagcgAGTGGGCATGGGTGGCAGCTGGGGTACGCTGCGCTTCAAACACAAGCTCCCCGTGGAGATGAGGGGACCCGACGGCGTGCACGTTGTTCACGGCAGCATGGGCACgctcctgacctctgacctcaacAGTCTGCCTGAGGACAACCAGCTGGCCCTGGCGCGCTCCATGGAGGCGCTTAACGCCACCGACAGGGGGCTGTACACCGAGCGCAATGCCCGTACTGAGTCGGCCAAGTCCACGCCGCTGCACCACAACGACAAGGTCGATAACACACTGTCCGAGAGCCCGCTGGAGATCACAGAGTTATGACTAGCCTCGCTGGTCTGAGCAGATCCACCACTGAGTGGAGTGTCCTCCTGTCCCCCTGActcttcctctatcctctcctcataGACTGAGTGTCAGACACTGACCACTGTGACCAGTATACAGCCAGGAGAGATTTGGGAAAGCGGGCAGAGGGCCAGGGGTTGGAGGAGGTAGAGTGTGTATAGTCTGGGAACTTCAAATGCCAGTGAAGATCTTTGTGAGCCATGGAAGGTATGTGTAAGggattttaatttaatttaatgccTGATGGTGGATCAAATGCATAGGCCTGTGTGTCAATTGAATACCTGGAACATAAAATAGCAAAGCAAACTGAAAGACTAAGATAAAACATTTTGATAAATAGGACATTATGGCCAGCTTGTCTCTTGCAGGATATTATTTGGTCTCTTACACATTCAGCTAAGATCCAGGTGCCCAGCTAACAACATTCCCACACTTTTAGAGAACATTCCCTTAAATGTCTCATTAGATCAttacccagtggtgtaaagtacttaagtaaaaatacttgaaagtactacttaagtcatttttgggggatatctgtactttacttttaattttctttaggaatgtagtgacgTTAAAGTATGTATTTTTTGCTCCATACATTCTCCCTGACTTCCAAAAgtacattacattttgaatgcttatcaggacaggaaaatggtctaattcacacaattatatcaagagaacatccctggtcattcctactgcctctgatctgactaaacacatgctttat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1556234 lncRNA downstream 5809 29949586 ~ 29949797 (-) True G1361681
TU1556229 lncRNA downstream 10395 29944999 ~ 29945211 (-) True G1361676
TU1556227 lncRNA downstream 10716 29944450 ~ 29944890 (-) True G1361674
TU1556225 lncRNA downstream 11983 29943334 ~ 29943623 (-) True G1361672
TU1556218 lncRNA downstream 17677 29937314 ~ 29937929 (-) True G1361665
TU1556910 lncRNA upstream 163777 30297778 ~ 30298120 (-) True G1362320
TU1556928 lncRNA upstream 192025 30326026 ~ 30326303 (-) True G1362337
TU1556929 lncRNA upstream 195405 30329406 ~ 30329618 (-) True G1362338
TU1556940 lncRNA upstream 209495 30343496 ~ 30343697 (-) True G1362349
TU1557010 lncRNA upstream 305860 30439861 ~ 30440142 (-) True G1362419
XR_005036503.1 mRNA downstream 82024 29855177 ~ 29873582 (-) False LOC110492894
XR_002469089.2 mRNA downstream 92533 29855177 ~ 29863073 (-) False LOC110492894
XM_021565563.2 mRNA downstream 253013 29674817 ~ 29702593 (-) True LOC110491798
XR_002468900.2 mRNA downstream 531953 29412470 ~ 29423653 (-) False LOC110491794
XR_002468901.2 mRNA downstream 531953 29412470 ~ 29423653 (-) False LOC110491794
XM_021565574.2 mRNA upstream 790604 30924605 ~ 31019310 (-) False LOC110491806
XM_021565575.2 mRNA upstream 790604 30924605 ~ 31019310 (-) False LOC110491806
XM_021565569.2 mRNA upstream 790604 30924605 ~ 31019311 (-) False LOC110491806
XM_036946710.1 mRNA upstream 790604 30924605 ~ 31019312 (-) False LOC110491806
XM_021565570.2 mRNA upstream 790604 30924605 ~ 31019313 (-) False LOC110491806
TU1556170 other downstream 30452 29923871 ~ 29925154 (-) True G1361619
TU1555797 other downstream 458051 29497113 ~ 29497555 (-) True G1361290
TU1554186 other downstream 1774666 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 1791379 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 2427469 27527163 ~ 27528137 (-) True G1359412
TU1558520 other upstream 1505436 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 1751748 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 1884793 32018794 ~ 32019498 (-) True G1364348
TU1559908 other upstream 2500464 32634465 ~ 32635511 (-) False G1365099
TU1559909 other upstream 2500562 32634563 ~ 32635511 (-) True G1365099

Expression Profile