RNA id: TU1556229


Basic Information

Item Value
RNA id TU1556229
length 213
lncRNA type inter_gene
GC content 0.55
exon number 1
gene id G1361676
representative True

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29944999 ~ 29945211 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

gaaggagaggcggccaaagaaagaattggttttgggggtgactagagagatatacctgctggagcgtgtgctacaggtgggagatgcaatggtgaccagcgagctgagataaggccctagcagggtcttgtagatgacatggagccagtgggtttggcgacgagtatgaagcgagggccagccaacgagagcgtacaggtcgcaatggtgggt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1556227 lncRNA downstream 109 29944450 ~ 29944890 (-) True G1361674
TU1556225 lncRNA downstream 1376 29943334 ~ 29943623 (-) True G1361672
TU1556218 lncRNA downstream 7070 29937314 ~ 29937929 (-) True G1361665
TU1556211 lncRNA downstream 14954 29929845 ~ 29930045 (-) True G1361658
TU1556210 lncRNA downstream 16824 29927872 ~ 29928175 (-) True G1361657
TU1556234 lncRNA upstream 4375 29949586 ~ 29949797 (-) True G1361681
TU1556684 lncRNA upstream 10316 29955527 ~ 29956472 (-) False LOC110492868
TU1556699 lncRNA upstream 18230 29963441 ~ 29963667 (-) True G1362120
TU1556700 lncRNA upstream 18511 29963722 ~ 29964049 (-) True G1362121
TU1556756 lncRNA upstream 102663 30047874 ~ 30052460 (-) True G1362171
XR_005036503.1 mRNA downstream 71417 29855177 ~ 29873582 (-) False LOC110492894
XR_002469089.2 mRNA downstream 81926 29855177 ~ 29863073 (-) False LOC110492894
XM_021565563.2 mRNA downstream 242406 29674817 ~ 29702593 (-) True LOC110491798
XR_002468901.2 mRNA downstream 521346 29412470 ~ 29423653 (-) False LOC110491794
XM_021567341.2 mRNA upstream 10395 29955606 ~ 30134001 (-) False LOC110492868
XM_036946709.1 mRNA upstream 10395 29955606 ~ 30543872 (-) False LOC110492868
XM_021565574.2 mRNA upstream 979394 30924605 ~ 31019310 (-) False LOC110491806
XM_021565575.2 mRNA upstream 979394 30924605 ~ 31019310 (-) False LOC110491806
XM_021565569.2 mRNA upstream 979394 30924605 ~ 31019311 (-) False LOC110491806
TU1556170 other downstream 19845 29923871 ~ 29925154 (-) True G1361619
TU1555797 other downstream 447444 29497113 ~ 29497555 (-) True G1361290
TU1554186 other downstream 1764059 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 1780772 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 2416862 27527163 ~ 27528137 (-) True G1359412
TU1558520 other upstream 1694226 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 1940538 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 2073583 32018794 ~ 32019498 (-) True G1364348
TU1559908 other upstream 2689254 32634465 ~ 32635511 (-) False G1365099
TU1559909 other upstream 2689352 32634563 ~ 32635511 (-) True G1365099

Expression Profile