RNA id: XR_002469089.2


Basic Information

Item Value
RNA id XR_002469089.2
length 1024
RNA type mRNA
GC content 0.45
exon number 5
gene id LOC110492894
representative False

Chromosome Information

Item Value
chromosome id NC_048580.1
NCBI id CM023234.2
chromosome length 78541548
location 29855177 ~ 29873630 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

aattttgtctcgCATcctagataaaaaaaaacatcacccaggtaggccagtcatgtgagaaactcgtcgTCAGACAAGGGAAAATTGTGTGTCCAAAACGGCTTTCAAGCTGTCAGTCATTCCCTTAGCAGCAAGAGCTTCTCGTGGATGCTGcggtgtacccaagtggcgtcgggagcaactgcttgcatgcgctgttggggaataatcagaattggttggtaacatagAATCGTTACACGAACTATGGACTCAGCTGTGTCTAGACTCTCTGCAACTACCTCTACACAAGAGATCTCCTAAAAGACTAAAATattattcGAAAGTGTCTTCGTCGAGGACAACTGAAGACTGCTGTGCTACTTCCGAAGAGTGATACAGTCCACCCGGTCCTGGGTTACCTCCAGACAAGTCCCCTGAAGCCTGTGTGTgtcgtagagcaaaacaaccgacaCCTTCGTGTTCATGAGAATCTCTCCTTTCAAGTCTAtccagtgtgcaaagctgccatcaagacaaattgctactttgaagaatctcaaatgtaaaatatactttgatttgtttgatatgtTCATGCCAGTAAATTTCAGCAAGTAGCAATGTGAACGtgtttgtgtgcatttgtgtgttgcAGGGGATTTGGAATAAGACagtggagacaggagacagagtaGGCTACGATTatatattaaatatttttttcttacatTTAGTTATGTTTAGGGCTGTTGGTAGGCCTCAGTCTGGAATGGCTCTTTGATGTTGTTGACACAATGCGTCAATAATGAAGGGGCCTGTGCTTTTACTGGTTGGCTCTCATGTCTTTCTCACTCAAACACCCACATGCAGAGCCACACTCAGAAGGGGTAGGCGCTCGGGAGCTATTACATTGGGGCTCCCAAGAGGCGCAGTGgactaagacactgcatctcactTTAAGAGGCACCACTgtagtacctggtttgaatccagactgtatcacatccagccatgattgggagtcccatagagtggcacacaa

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1556050 lncRNA downstream 35574 29819347 ~ 29819603 (-) True G1361508
TU1556005 lncRNA downstream 36320 29755523 ~ 29818857 (-) True G1361468
TU1555994 lncRNA downstream 114211 29740727 ~ 29740966 (-) True G1361458
TU1555969 lncRNA downstream 123902 29697398 ~ 29731275 (-) True G1361433
TU1555932 lncRNA downstream 194028 29660930 ~ 29661149 (-) True G1361403
TU1556198 lncRNA upstream 40808 29903881 ~ 29904104 (-) True G1361645
TU1556172 lncRNA upstream 44272 29907345 ~ 29908547 (-) True G1361620
TU1556210 lncRNA upstream 64799 29927872 ~ 29928175 (-) True G1361657
TU1556211 lncRNA upstream 66772 29929845 ~ 29930045 (-) True G1361658
TU1556218 lncRNA upstream 74241 29937314 ~ 29937929 (-) True G1361665
XM_021565563.2 mRNA downstream 152584 29674817 ~ 29702593 (-) True LOC110491798
XR_002468900.2 mRNA downstream 431524 29412470 ~ 29423653 (-) False LOC110491794
XR_002468901.2 mRNA downstream 431524 29412470 ~ 29423653 (-) False LOC110491794
XR_002468903.2 mRNA downstream 431524 29412471 ~ 29423653 (-) False LOC110491794
XR_005036500.1 mRNA downstream 1088175 28626132 ~ 28767002 (-) True afap1l2
XM_021567341.2 mRNA upstream 92533 29955606 ~ 30134001 (-) False LOC110492868
XM_036946709.1 mRNA upstream 92533 29955606 ~ 30543872 (-) False LOC110492868
XM_021565574.2 mRNA upstream 1061532 30924605 ~ 31019310 (-) False LOC110491806
XM_021565575.2 mRNA upstream 1061532 30924605 ~ 31019310 (-) False LOC110491806
XM_021565569.2 mRNA upstream 1061532 30924605 ~ 31019311 (-) False LOC110491806
TU1555797 other downstream 357622 29497113 ~ 29497555 (-) True G1361290
TU1554186 other downstream 1674237 28177715 ~ 28180940 (-) True taok2b
TU1554168 other downstream 1690950 28163463 ~ 28164227 (-) True G1359763
TU1553783 other downstream 2327040 27527163 ~ 27528137 (-) True G1359412
TU1553687 other downstream 2495615 27357284 ~ 27359562 (-) True G1359321
TU1556170 other upstream 60798 29923871 ~ 29925154 (-) True G1361619
TU1558520 other upstream 1776364 31639437 ~ 31650697 (-) True G1363836
TU1558829 other upstream 2022676 31885749 ~ 31886112 (-) True G1364105
TU1559113 other upstream 2155721 32018794 ~ 32019498 (-) True G1364348
TU1559908 other upstream 2771392 32634465 ~ 32635511 (-) False G1365099

Expression Profile