RNA id: TCONS_00004425


Basic Information

Item Value
RNA id TCONS_00004425
length 8675
RNA type mRNA
GC content 0.50
exon number 57
gene id XLOC_002323
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37268854 ~ 37394957 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

TCGGCGTGAGCGGCCATGGCGGCGCAGAAGCCCGTGGAGTGGGTCCAGGCCGTCATCAGCCGATTCGACGAGCAGCTTCCTGTGAAAGTCGgtgttcaaaacacacacactaaaatcAGCACAGAACACAATAAGGAATGCCTGATCAACATCTCCAGGTACAAATTCTCCCTGGTCATCAGCGGACTCACCAACATACTGAAGAACGTCAACAACATGAGAATATTTGGAGATACTGCAGAGAGGAATCTTTACCTGTCACAGCTAATCATCTTGGACACATTGGAGAAGTGCTTGGCAGGGCAACCGAAAGACAGCATGCGTCTAGACGAGACGATGCTTGTGAAGCAGCTGTTGCCGGAGATCTGTCATTTCATCCACACGTATCGTGAGGGAAACCAGCACGCGGCTGAGCTGAGGAGCTCCGCCTGTGGTGTCCTGTTCTCTCTGAGCTGCAGTAACTTCAACGCCGTCTTCAGCCGCATCTCCACCAGGCTACAGGAGCTGACTGTCTGCTCGGAAGATACTGTGGACGTGCACGACATTGAGCTCATTCAGTACATCAATGTGGATGGCTGTAAACTCAAACGCCTCCTCCAAGAAACTGTCTTTAAATTTAAAGCCTTAAAGAAGCCGGCACAGTTAAGTGTCATCTTCAATTTAGAGAAGGCGTTTTGGAACTGGGTGGAGAATTATCCTGATGAATTCACCAGGCTGTACCAGAGGCCTCAAACAGACATGGCTGACTGTGCTGAAAAGCTGTTTGATCTGGTGGACAGTTTTGCCGAAAGCACGAAGAGAAAAGCAGCTGTTTGGCCTCTCCAGATCATCCTCCTCATCCTCTGTCCTGATATCACGCAAGACATGTCCAGAGATGCAGCAGAGGACGCCAAAGACAACAAGaagctgtttttggagaaTCTGCGGAAAGCTTTGACTGGCCACGGTGGAAGCAAACAGCTGACAGAGAGCGCAGCCATCGCCTGCGTTAAACTGTGTAAAGCGTCCACATACATCAGCTGGGAGGATCACTCTGTTATCTTCCTGCTGGTGCAGTCTATTGTCATGGACCTGAAGGGTTTGCTGTTTAACCCAGTTAAGCCGTTTTCCAGAGGCGCAGGAAGTCAGAGTGCAGACCTGGACTTAATGATCGACTGCTTCGTCTCCTGTTTCAGAATCAACCCACACAACAATCAGCAGTTTAAAGTGTGTTTGGCCTCGTCCTCCCCTTCAACCTTTCATTTCGTGCTGGTGAATTCTCTCCACCGCATCATCACTAATTCTCCACTGGACTGGTGGCCGAAGATCGACACAGTGTACTGTTATTCTGGAGAGCTACGGCTCATGTTTGCGGAGACTCTGGGACGAGTGGTGCAGGGCTGCAGTCACACAACGCTTCGATTGACTCCGAGTTTGACGTTTAAGGAGAAAATGAGCAGTCTGAAGTTTAAAGAGAAAACCACTGATCTGGACACCAGGAGTCTGAAGTATCTGCTCTTGGCTCTGGTGAAACTCATACATGCGGATCCCAAACTGATGCTCCATAATCCAGGAAAACAAGGTCTGGAGGTTCACAGCAGCACAGCAGAGCTCATCACAGGCCTCGTCCAGCTCGTGCCTCTTGCTAACATGGGAGAGATTTCCCAGGAGGCCATGGAGGCTCTGCTGGTCCTGCATCAGCCTGAAAGCATTGAGCTGTGGAACCCGGATGCCCCTATGGAGACCTTCTGGGACATCAGTTCTCAGGTGCTTTACTTCATCTGTAAGAATCTGTTTGGTCATCCGCTGGTTAGCAGTACTGAGATTCTGAAATGGCTGAGAGAGATTCTCATCTGCAGAAACAAGTTTCTTCTAAGGAATAAGGATCGGGCCACAGTGGGCAGCAACATTGCTACCTGCCGGCAGGCTCAGACCAAGCTGGAGGTCTGTCTCTACATGTTCCTGTGGAGTCCAGACATGGAGGCCGTTCTAGTGGCCATGTCCTGTTTCCGTTACCTGTGTGAGGAGGCAGAAATCCGGTGCGGTGTTGAAGACATCCCAGTGCAGTCTCTTCTGCCAAACTACAACACCTTCATGGAGTTTGCCTCTGTCAGTAACATGATGGTCACAGGTCGTTCAGCTCTACAGAAGAGAGTAATGGCTTTGCTTCGGAAGATTGAACTTCCCACTCCTGGAAACACAGAGGCCTGGGAAGACACGCATGCCAAATGGGAACATGCAACCAAGTTGATTTTAAGTCACCCGAAAACGAAACTGGAAGACGGTCAGGAATGGATCAATATGACAGGCTTCTTGTGTGCGTTGGGCGGTGTGTGTTTGCAGCAGAGGCATGTGTCAGCTCTGGCCACCTACAGTCCTCCTATGGGCACCCTGAATGACCGCAAGGGCTCGATGGTGTCGATGAGCTCTTGTGAGGGCAGCCCAGAGACACCTCTCGGCCGCTTTCTGGACCGTCTTCTGTCCCTGATGGTGTGCAGTCACGAAAAAGGCCATCAGATCCGCACTAATGTCAAAGACCTGGTGGGGCTGGAGCTCAGTCCAGTGCTTTACCCAATGCTCTTCAACAAACTCAAGAACAGCATCAGCAGATTCTTTGATGCCCAGGGGCCGGTGCCAATTAATGAGACCAACACACAGTTTGTGGAGCAGACCATCGCCATCATGAAGAACCTTCTGGACAACCATACAGAAGGTAGCTCGGAGCATCTGGGTCAAGCCAGCATTGAGACCATGATGCTCAACCTGGTCAGGTATGTGCGTATTCTTGGCAACATGGTTCATGCCATTCAGATTAAAACCAAATTGTGTCAGCTGGTGGAGGTCATGATGGAGCGCAGAGATGATCTTTCCTTCTGCCAGGAGATGAAGTTCAGgaaTAAGATGGTCGAGTATCTGACAGACTGGGTGATGGGAACCTCCAACCAGGCTGCTGATGATGATGTCAAATGCCTCACCAGGGATCTGGATCAGGCGAGTATGGAAGCGGTGGTGTCTCTTCTGGCCGGTTTGCCTCTTCAGCCAGAGGAAGGTGACGGAGTGGAGCTGATGGAGGCCAAATCTCAGCTCTTCCTGAAATACTTCACTCTGTTCATGAACCTGCTGAACGACTGCAGCGAGGTGGAGGACGAGGGTCAGCCGGTGGTCGGGAGGAAGCGAGGCATGTCCAGGCGATTGGCATCATTACGACACTGCACCATCCTGGCCATGTCCAACCTGCTTAGTGCCAATGTGGACAGCGGCCTGATGCACTCTATCGGCCTGGGCTATCATAAAGACCTTCAGACCAGAGCCACCTTTATGGAGGTGCTCACCAAGATTCTTCAGCAAGGCACAGAGTTCGACACGCTGGCAGAGACGGCTCTGGCGGACCGCTTCGAGAGGCTGGTGGAGCTCGTCACCATGATGGGGGATCAGGGCGAGTTGCCCATCGCAATGGCTCTGGCCAGTGTGGTGCCCTGTTCACAGTGGgATGAACTGGCACGTGTTCTGGTAACTCTCTTCGACTCGAGGCATCTGTTATATCAGCTCCTGTGGAATATGTTCTCTAAAGAGGTGGAGTTGGCGGATTCCATGCAAACGTTGTTCCGTGGCAACAGCCTGGCCAGTAAAATCATGACGTTCTGCTTTAAGGTGTATGGAGCCACATATCTGCAAAAGCTGCTGGAGCCGCTGTTGAGAAGTGTGATTGCGGGCACCGAGTGGCACATGCTGAGCTTTGAGGTGGATCCTACCAGACTTGAAAATGGTGAAAATTTGGAGGAGAACCAGCGGAATCTGCTTCGAATGACTGAACGCTTTTTTAAGGCCATAATCAGTTCATCTGGAGAGTTTCCTCCTCAGCTGCGCAGCGTCTGTCACTGTCTCTTTCAGGCTACATGTCACTCTCTCCTGTCTAAAGCCTCTGTCAAAGACAGAAAGGAAGTGAGGAAAGCAGTCGTGAGCCAGCGTTTTCCTCAGAACAGCATTGGAGCTGTAGGCAGTGCCATGTTCTTGCGATTCGTGAATCCAGCTATAGTCTCTCCATACGAGGCTGGGATTCTTGACAAAAAACCTCAGCCTAGGATAGAAAGAGGCCTAAAACTCATGTCCAAGATTCTCCAAAGTATTGCCAACCATGTTTTGTTCACAAAAGAGGAGCACATGAGGCCTTTCAATGACTTTGTGAAGAGTAATTTTGATGCTGCCAGAAGATTTTTCCTGGACATCGCCTCTGATTGCCCTGCTAGCGACTCTCTCAACCATAGCCTGTCCTTTATTAGTGATGGGAACGTTCTGGCTCTGCACAGACTGCTGTGGAACAATCAAGAAAAAATTGGCCAGTATTTATCTAGCAACAGGGATCATAAAGCAGTCGGAAGAAGGCCTTTTGATAAGATGGCCACCCTGCTCGCTTACCTGGGTCCCCCAGAACACAAACCTGTGGCAGATACTCACTGGTCCAGTTTGAATCTTACCAGCTCCAAATTTGAGGAGTTCATGACAAGGCACCAGGTCCATGAGAAAGAAGAGTTCAAAGCATTGAAGACTCTACACATCTTCTACCAGGCTGGAACATCAAAGAACGGAAACCCTGTGTTTTACTATGTGACGCGCAGGTTCAAGACGGGCCAGATAAATGGGGACTTGCTTATATACCATGTCCTTCTCACCCTCAAACCATACTATGCCAAACCCTATGAGCTAGTGGTGGATTTAACCCACGCTGGTCCAAGCAACCGCTTCAAGACCGACTTCCTCTCCAAGTGGTTTGTCGTCTTTCCGGGATTTGCATATGAAAACGTTGCTGCCATTTACATCTATAACTGTAACACATGGGTCCGGGAATATACCAAATATCATGAGAGACTCTTGACGGGACTCAAAGGCAGTAAGAAGTTACTGTTCATTGATTCGCCTGCACGGTTGGCTGAACATGTGGAACCAGAGCAACAGAAGCTTCCGGCAGCTACACTTGCACTGGAAGAAGACCTGAAAGTCTTTCACAATGCGCTAAAACTGGCCCACAGAGACACCAAAGTATCTATTAAGGTGGGCAGCACAGCAGTGCAGGTCACCTCAGCCGAACGAACACGAGTTTTGGGTCAATCGGTCTTCCTCAACGACATCTACTATGCTTCAGAGATCGAGGAGATTTGCCTAGTGGACGAAAATCAATTCACACTGACTATCGCTAACCAAGGGACGCCGCTGACCTTCATGCACCAGGAGTGTGAGAGCATAGTTCACTCCATTATCCACATCCGCACGCGCTGGGAGCTTTCCCAACCTGACTCCATTCCTCAACACACCAAAATCAGGCCCAAAGATGTTCCTGGGACCCTTCTCAACATCGCTCTCCTAAACCTGGGCAGCTCGGACCCCAGTTTAAGGTCTGCAGCTTATAACCTCCTGTGCGCCTTAACATGCACCTTTAACCTGAAGATCGAAGGGCAGCTTCTGGAGACGTCTGGCCTGTGCATCCCTGCCAATAACACTCTATTCATCGTGTCCATTAGCCAGACTCTAGCGGCTAATGAGCCTCACCTGACCCTGGAGTTCCTGGAGGAGTGTATCTCTGGATTCAGCAAGTCCAGTATAGAACTAAAGCACCTGTGTTTAGAGTACATGACTCCTTGGCTGCTGAACCTGGTACGCTTCTGCAAGCATAGCGATGATGCCAAAAGGCAACGAGTCACCGCCATTCTGGACAAACTCATTACCATGACCATCAACGAAAAGCAGATGTATCCATCCATTCAGGCCAAGATCTGGGGGAGCTTGGGCCAGATAACTGATCTCCTTGATGTAGTTCTGGACAGTTTCATTAAAACCAGTGCGACAGGAGGTCTCGGATCCATCAAAGCTGAAGTGATGGCGGACACTGCAGTGGCTTTGGCTTCTGGGAATGTCAAATTGGTGTCAAGCAAGGTGATCATTCGCATGTGCAAAATCATCGATAAGACGTGTCTGTCGCCCACACCAACACTGGAGCAGCACCTGATGTGGGATGATATCGCCATCCTGGCCCGGTACATGCTCATGCTGTCCTTCAACAACTCTCTGGATGTAGCCGCACACCTGCCGTACCTGTTTCATGTGGTGACCCTGCTGGTGGCCACGGGGCCTCTGTCTCTGCGGGCCTCCACGCATGGCTTGGTCATCAACATCATCCACTCCCTCTGCACATGCTCCCAGCTGAGCTTCAGCGAGGAGACCAAGCAGGTGTTGCGTCTCAGTCTGACCGAGTTCTCCCTGCCGAAGTTCTACCTGCTGTTCGGCATCAGCAAGGTCAAGTCGGCTGCGGTCATTGCATTTCGTTCCAGCTACAGGGATCGCTCATTCTCGCCGGGGTCCTATGAGAGAGAGACCTTTGCTCTGTCATCTCTGGAGACGGTCACAGAGGCGCTGCTGGAGATCATGGAGGCTTGCATGAGGGACAttccaggctgtaaatggctagACCAGTGGACCGATCTGGCGCAGAAGTTTGCATTTCAATATAATCCATCCCTCCAACCACGGGCACTTGTGGTATTCGGCTGCATCAGCAAACGAGTCACACATACGCAGATGAAACAGATCATACGGATCTTGAGCAAGGCCAGCCTTCTCCTCAGCATCGACCGGGGTTTGGAGAGCTGCCTGAAGGGTCCCGATAACTGTAACAGCCAGGTGCTAATCGAAGCCACAGTCATTGCTCTCACTAAACTACAACCTTTGCTCAACAAGGACTCAGCGATGCACAAAGCTCTGTTCTGGGTCGCTGTGGCCGTACTGCAGTTGGATGAGGTGAATCTGTATTCTGCAGGAACTGCTCTGCTTGAACAGAACCTACACACACTCGATAGCCTGAGAGTCTTCAACGACAAGAGTCCTGAGGAGGTGTTTATGGAGATCCGTCAGCCTCTGGAATGGCACTGTAAACAAATGGACCACTTTGTTGGCCTCAATTTTAACTCCAACTTCAATTTTGCTTTGGTCGGTCACCTGTTGAAAGGGTTCAGACACCCCTCCCCCACCACAGTGGCACGTACCATCCGCATCCTGCACATGCTGTTGGCGTTAGTAGGAAAACACCAGAACTGTGATAAATTTGAGGTGAACACACAGAGTGTGGCGTATCTGGCAGCGCTTCTCCCGGTGTCAGAGGAAGTGCGCAGCCGCTGCAGTCTGAAACACAGAAAATTGTTGCTTTTCTCTGATGTCACAATGGAGAATGTTCAAATGGATCCGTATTCTGTACATCACGAGGATCCAAGCGGCAGAACGTTGCGGGAAAACGAGCTGTGGGCATCCCCGAAAGTCTCAGAGCGATACTTGGTGGCCCATTTCCCCATAATGGGGCAGATCAGCCCACGAACACGCAAATCAATGAGCTTGGACATGGGACAACCCTCTCAAGTCAACACCAAGAAGCTTCTGGGCACCAGAAAAAGCTTTGACCTCCTGTTATCAGACAGCAAAGCACCAAAGAGGCCTGAAATAGAGACTGGTATCACAACGCCACCCAAGATGAGGAGAGTGGCTGAAAACGAATATGAAATCGAAACCCCAAGAATCTCCCATCACCACTTGCGGAAGGTTTCTGTGTCCGAGTCCAATGTCCTGCTTAATGAAGAAGTTCTCACAGATCCCAAAATCCAAGCACTGCTTCTGACTGTGCTGGCCACTCAGGTGAAAAACACTTCAGATGAATTTGAGCAGAGGATCTTGTATGAGTTTCTAGCCGAGGCCAGTGTTGTCTTCCCAAAAGTCTTTCCTGTTGTtCATAATCTTCTGGACTCTAAGATTAATACGTTGTTGTCGCTGTGTCAGGACCCACATCTTCTGAATCCAGTTCATGGAATTGTTCAGAGTGTAGTTTATCATGAAGAGTCTCCACCTCAGTACCAACCGTCCTACCTGCAAACTTTTGGGTTTAATGGACTCTGGAGGTTTGCCGGTCCTTTTTCGAAGCAAACTCAGTTCCCAGACTATGCAGAGCTGATAGTCAAGTTTCTGGATGCACTGATTGACACCTATCTTCCGGGCATTGATGAGGAAACAAGCGAGGAGGGTCTGCGGACACCCACCTCTCCATACCCTCCACCTGTGCAGAGCCAGCTCAGCATCACTGCCAACCTCAACCTCTCAAATTCAATGACCTCGCTGGCCACCTCCCAACATGCACCAGGAATGGATAAAGAGAAAGTGGATCTATCCCCCACCACGGGTTTGGCAGCCGGCGGACGCACACGCCACGGCTCGGCCAGCCAGGTCCAGAAACAGCGCAGCACCGGCAGCTTTAAGAGACCTAGCATTAAAAAGATTGTATGAGAACTGCAGCACAGCAGGGTTTCGCCTCTGCTGGACCTCTAACATACATTCTGCTGCCTTTTCTGCGGCTTCTCTTCACTCCCGCTAAACCCAGCATTTACGATAATCTTTAGGTTCTGCTGTTCGGGATCCAAATGAAAACCTCTGTTTTTAAAACCAGCCACTGTTTAACACGGATGGGAGGACGTCCAGTATTTTtagttatatttgtgcataatagAACTGAATagtatattgttttttaaaagcactaCATTCTTTCTTACTTTTAATACGTGGAAGTATTAACCAAGTGCCATTCCTTTGTTGCATTTATTTGGTTTGATTTATGAGACGCTTAAAAGAAATGTACAATCGTTCATGAACAACTACAAAAACGT

Function

GO:

id name namespace
GO:0007507 heart development biological_process
GO:0043087 regulation of GTPase activity biological_process
GO:0007613 memory biological_process
GO:0001568 blood vessel development biological_process
GO:0046959 habituation biological_process
GO:0070373 negative regulation of ERK1 and ERK2 cascade biological_process
GO:0060251 regulation of glial cell proliferation biological_process
GO:0070444 oligodendrocyte progenitor proliferation biological_process
GO:0045685 regulation of glial cell differentiation biological_process
GO:0007165 signal transduction biological_process

KEGG: NA

ZFIN:

id description
ZDB-GENE-091111-4 Acts upstream of or within several processes, including circulatory system development; learning or memory; and negative regulation of ERK1 and ERK2 cascade. Is expressed in blood vasculature; dorsal aorta; head; heart; and spinal cord. Human ortholog(s) of this gene implicated in autistic disorder; hematologic cancer (multiple); nervous system cancer (multiple); neurofibromatosis 1; and neurofibromatosis-Noonan syndrome. Orthologous to human NF1 (neurofibromin 1).

Ensembl:

ensembl_id ENSDART00000131897

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004420 lncRNA upstream 101403 37145098 ~ 37167451 (+) True XLOC_002320
TCONS_00005928 lncRNA upstream 204464 37012191 ~ 37064390 (+) True XLOC_002317
TCONS_00005927 lncRNA upstream 204920 36805073 ~ 37063934 (+) False XLOC_002317
TCONS_00005929 lncRNA downstream 83288 37478245 ~ 37478556 (+) True XLOC_002325
TCONS_00004428 lncRNA downstream 105289 37500246 ~ 37573759 (+) False XLOC_002326
TCONS_00005930 lncRNA downstream 105289 37500246 ~ 37729160 (+) False XLOC_002326
TCONS_00004430 lncRNA downstream 105518 37500475 ~ 37573670 (+) False XLOC_002326
TCONS_00004431 lncRNA downstream 108899 37503856 ~ 37729160 (+) True XLOC_002326
TCONS_00004424 mRNA upstream 11865 37182626 ~ 37256989 (+) True XLOC_002322
TCONS_00004423 mRNA upstream 14835 37181780 ~ 37254019 (+) False XLOC_002322
TCONS_00004422 mRNA upstream 41475 37173029 ~ 37227379 (+) False XLOC_002322
TCONS_00004419 mRNA upstream 101403 37145007 ~ 37167451 (+) False XLOC_002320
TCONS_00004418 mRNA upstream 101413 37137464 ~ 37167441 (+) False XLOC_002320
TCONS_00004426 mRNA downstream 5881 37400838 ~ 37415223 (+) True XLOC_002324
TCONS_00004427 mRNA downstream 105277 37500234 ~ 37784024 (+) False XLOC_002326
TCONS_00004429 mRNA downstream 105311 37500268 ~ 37779748 (+) False XLOC_002326
TCONS_00004432 mRNA downstream 532143 37927100 ~ 37928125 (+) True XLOC_002328
TCONS_00004434 mRNA downstream 586514 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004421 other upstream 121070 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 308164 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004403 other upstream 599820 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004398 other upstream 826007 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 980351 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004438 other downstream 1093751 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 1153132 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004447 other downstream 1288709 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004472 other downstream 2297420 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 2365797 39760754 ~ 39760879 (+) True XLOC_002356

Expression Profile

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Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) CI01000304_17980209_18006985.mRNA True 5659 mRNA 0.49 35 CI01000304 17979485 ~ 18007006 (+)
bowfin (Amia calva) AMCG00005552 True 4899 mRNA 0.55 35 CM030142.1 3652635 ~ 3692107 (-)