RNA id: TCONS_00004426


Basic Information

Item Value
RNA id TCONS_00004426
length 2523
RNA type mRNA
GC content 0.45
exon number 12
gene id XLOC_002324
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37400838 ~ 37415223 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

CTTTTGGCACCGTTTTACATGTTTCTGTTGTAGCTGtagtgtgatttattttttattaatgttttatactCTGTTGTCCATTAAGCATTTTCTTTGAAATGCTTCGTTTATCGTCACATTTTCAAGCATATTAATACAATTTGGAATTCAATCGCCTGATTGCTGACACCTGCTCACGTGACATCACAATCAAACCCTCGCTGCTGAGCTTCACGtgGATCTGTGGAGGGAGGATGCCGGTGTTGGTGAGGCCGCTGGTTTCTGTCACTGTGTTGACTCTGCTGGGCTGGTGCTGGTACAGTTTTAGAAGGAGGAGAAAAATTAAAGCTTCTCTCTGGACTGAAGAAGAGAAGTGTTTGTTAGACGGAAGCAGCCCGGTTCAGTTTTCACCTACTGACAACGGTGTTTTGGGGCAAAGtgacCTGAAGATGAATCAAAACATCTCCAGATCCCCTGAAATTACAGAGTTAACTGACACATCACCATTTGTGGAAATGCACAAGTTTACCAGTACCTCACCTGTAATAGGCCTCAATGAGAGGGTTCGGCCTGAGCCAGAGGGAGAAGTATCAATTCGTTTCCCTGAAACAAAccaaagcaaaaaagaaaaggacGATTTTACTGGTGAAGTTCATGAAGATGACTTTACTGATGATAAAGATGGCAGCAGCCTGTCTGATTTCTCCCCTGAACAAAGCCAGGAGAACATGGAGATCATCAGTTCTGTTCTGGTCCAGCAAGTAATACACACAACAGAAAACCAGCACTCCAGCGATCCACTTTCGAGACCTCCAAACAGTGGATTTCAATCTGCTTCTCAAGATCTAGTTCAGCATCAAAGCATCAGTGGCGATGACAACGACAGAGAAACCGGCTCATTCAGGAAAAAACTGCTCAGTGATTTAGGAGCTTCTGTTGGAGATGATTCTGGATGTAATTCCAGCTTCTCAGAGGATGTTTCCGGTTCGGAGGGACTGACCTGTGAGATCTCAGAGGAGGAACAAAGCTTTTTAATGACAGAATCAGACACAACCAGCATAGACGGCAAAATGATTCCCAGCATTCTCGGAGAGGGAGAGGAGGAGGCCTGGCATGGTTCAGGTGTTGAAAGCTGCATTGTTGCTGATACTCAAATGAGCAGCTTGGCTCCTCCTCCTTCCCCGCCCATCATCCAGTGGGACATAGAAGTGCCAACGCATCTTGTTGGTCGATTGATCGGGAAGCAGGGAAAGTTTATGAACTTCCTCAAGCAGAGCTCTGGAGCAAAGATCTACGTCTCCACCCTGCCGTTCACTCACGATATTCAAATCTGCCACATTCAGGGCTCACAACAGCAGGTGGATGAAGCTCTCTCTCTTGTCAGGAAGAAGTTCAAAGATCTGGATCTGAGTAATTGTGCTCCTCTGCCCTGCCTGCCCATCACATCCTGGCTGCTGCTTCCTCAGGATGTGTTTGTGGAGGTGATGGTGTCGCGGGTGGAGGCGGCTCATCATCTGTTCGTTCATCAGCACAGTCATCCATCTCACCAGGTGCTTCCCACACTCATACAGGCCATGCAGCTCTGCTACTCTCAGCCGGGGTGTCCTAGCCTGCCCACTCCTGTTGAAgTGGGTGTGGTCTGTGCCGCTCCGGTAACAGGAAGTGGCTGGCAGAGAGCACAGGTCATTCAGTATGATGGAGAGACTGGCACCACTCATATCAGATATGTAGATAGCGGAGGATACGACACCGTGAACAGCACCACCCTCAGGCAGATCAGGTCAGACTTTGTGACGTTACCTTTCCAGGCTGCAGAGGTTCTGCTGGACAATATCATGCCTTTGCCAGGTGATGAGGAGTTTTCTCTGGAAGCCAAAGAAGCACTGGAGGAATCAACTGCTAATGTGGCCCTAATTCTAAAGGTGACTGGCAGTCAAGATGGACTTCCTCTGGTGCACCTGTGGAAACAGGCAGGAGACGAGATGGTTCTGATCAACAGATCACTGGCTGATCAAGGGTTTTTCAGCTGGTTTGACACTCAGTGATCCTCCCAACACCCATTCACACCGTAAATCCTCTTTTACACTTAAGTACATTTGTTTGTTGTACGGAGATTGTGTTGGAAACctcatttttgaatatttttatttaaaatgttgatatgatataaaatgttattatgaTGTTATTTAACAGAACATTGAATTAATTTATAATCCCAGCATGCATCGCAGAGTAAATCTGACTTAATGCAGTACACCAAACTGCTCGTAGGATACTGGTGTTAATATTGGACTGTTTTCTCAGATGGTCTCTTAAATGATGTTGGGTTGAAAGCTTGTGTTATGCTGAGGTATTTTGATATTGAggtatgttgtttttgttttgtagtcATTTGATTTGTTAGCTCTCAGTtttgtatttagttgtgtttgagGAAGATAAGAGTGATGATGGTGCTCTCTGACTGAACTCTATACTTTTACACTGACGCTGCCAAACATCTCACTGCTGTTGGAGTAAAAGGTCTGTGGAAATCACAAA

Function

GO:

id name namespace
GO:0010738 regulation of protein kinase A signaling biological_process
GO:0005739 mitochondrion cellular_component
GO:0034237 protein kinase A regulatory subunit binding molecular_function
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5980 Predicted to enable RNA binding activity and protein kinase A regulatory subunit binding activity. Predicted to act upstream of or within regulation of protein kinase A signaling. Predicted to be located in mitochondrion. Orthologous to human AKAP1 (A-kinase anchoring protein 1).

Ensembl:

ensembl_id ENSDART00000136554

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00004420 lncRNA upstream 233387 37145098 ~ 37167451 (+) True XLOC_002320
TCONS_00005928 lncRNA upstream 336448 37012191 ~ 37064390 (+) True XLOC_002317
TCONS_00005927 lncRNA upstream 336904 36805073 ~ 37063934 (+) False XLOC_002317
TCONS_00005929 lncRNA downstream 63022 37478245 ~ 37478556 (+) True XLOC_002325
TCONS_00004428 lncRNA downstream 85023 37500246 ~ 37573759 (+) False XLOC_002326
TCONS_00005930 lncRNA downstream 85023 37500246 ~ 37729160 (+) False XLOC_002326
TCONS_00004430 lncRNA downstream 85252 37500475 ~ 37573670 (+) False XLOC_002326
TCONS_00004431 lncRNA downstream 88633 37503856 ~ 37729160 (+) True XLOC_002326
TCONS_00004425 mRNA upstream 5881 37268854 ~ 37394957 (+) True XLOC_002323
TCONS_00004424 mRNA upstream 143849 37182626 ~ 37256989 (+) True XLOC_002322
TCONS_00004423 mRNA upstream 146819 37181780 ~ 37254019 (+) False XLOC_002322
TCONS_00004422 mRNA upstream 173459 37173029 ~ 37227379 (+) False XLOC_002322
TCONS_00004419 mRNA upstream 233387 37145007 ~ 37167451 (+) False XLOC_002320
TCONS_00004427 mRNA downstream 85011 37500234 ~ 37784024 (+) False XLOC_002326
TCONS_00004429 mRNA downstream 85045 37500268 ~ 37779748 (+) False XLOC_002326
TCONS_00004432 mRNA downstream 511877 37927100 ~ 37928125 (+) True XLOC_002328
TCONS_00004434 mRNA downstream 566248 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004433 mRNA downstream 566248 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004421 other upstream 253054 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 440148 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004403 other upstream 731804 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004398 other upstream 957991 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 1112335 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004438 other downstream 1073485 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 1132866 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004447 other downstream 1268443 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004472 other downstream 2277154 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 2345531 39760754 ~ 39760879 (+) True XLOC_002356

Expression Profile

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