RNA id: TCONS_00004427


Basic Information

Item Value
RNA id TCONS_00004427
length 2259
RNA type mRNA
GC content 0.45
exon number 15
gene id XLOC_002326
representative False

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37500234 ~ 37784024 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

gtatgcatgtgtttggAGTTGGTTGGGCTTTGAGCAATGGAAGCGGACGCGAGTCAAGTCACCTCTGGAAGCCTGAACGATTCGCAACACGACCCGGGTAAAATGTTTATCGGTGGACTCAGCTGGCAAACCTCACCAGACAGCCTTAGAGACTATTTCTGCAAATTCGGGGAGATCAGAGAATGTATGGTGATGCGCGACCCCACCACCAAACGCTCCAGAGGGTTTGGCTTCATCACGTTTGCAGATGTTTCCAGTGTAGATAAAGTCTTAGCTCAACCACACCACGAATTAGACTCCAAGACGATTGATCCTAAGGTCGCCTTTCCTCGACGTGCTCAACCCAAGATGGTCACAAGAACAAAGAAAATCTTTGTGGGTGGATTATCAGCGAGCACAGTGGTCGAAGATGTGAAGCAGTATTTTGAACAGTTCGGAAAGGTAGAGGATGCCATGCTAATGTTTGATAAAACTACAAACAGACATAGAGGCTTCGGCTTCGTAACGTTCGAGAATGAAGACATTGTAGAGAAAGTCTGTGAAATTCATTTTCAcgaaatcaataataaaatggTAGAATGTAAGAAGGCTCAACCAAAGGAGGTGATGTTTCCTCCAGGCACGAGGGGGAGGGCGAGAAGTCTTCCCTACACCATGGACGCCTTCATGTTGGGCATGGGCATGTTGAgttaTCCAAACATTGTGGCAACGTATGGTCGTGGATACACAGGATTCTCTCCTAGCTACAGTTACCAGTTTCCAGGTTTTCCAGCGACTGCGTACGGACCGGTGGCGGCGGCAGCAGTGGCGGCAGCACGAGGCTCAGGGTTTCCAGATTATGGCTTTTACTCTGGGCCTGGAGACCAGCGGGCCGCCCCCTGCTCCTTTGCTGATTATGCCACCCTGGGACCCCATACAGGTCAGATGCTGCAGAGCGAGCACGTCACCTCCACCTGCAACTCTCCGTCCCAGCACCACCCAAGCCCGGACCACTTTAAAAGCTCAGGTGCTAACCCTCCTCGGCCTGGAGGTTTCCCCGGTGCGAACAGTCCTGGCCCCGTGGCAGACCTGTATGGCCCCAGCAGTCAGGACTCAGCAGTGGGAAATTACATCAGCGCTGCCAGTCCTCAGCCAGGCTCCGGGTTCAATCACAGTATCGCGGGTCCTTTGATTGCCACAGCATTTACAAATGGGTACCACTGAAAGCTAGCTGAAGACGAGGCACCAACTCTTTGAAGAGTTTGTCTGGAGGCCCTGGGAAAACATCCGGAGTCTCTGATTGGTTCGTGTACAGTTGATGTCATAAAAAGACTTCAAGCACTACAGGTTCTGATTGGTCGAAGGAGAGACGAGGAGGGTGGAACCAAATAAAGTGGACAAGAACAAACACGATCATCTCAGAAAACCAACATCACAACTGCTGTAACTACTCCAACCCTCCTGTCTCTGCAGGACTTCTCCctgtttttaattgatttttacaCGCGCTTCTCTTCCTTTCTGTCAGCTTTTGAAATGACTTTGGCTTTTAGAGACACACTTGTAGATAAGCGAGTTATTCAGCCGTGATCTTTTTTCACTCATTTTTAGTGTTCGCTAGTCTTGTCAATTTTTTTGCGCTCATGGACAGACGCCACATTGAAAGACATccattgggggaaaaaaagaaaataatcttaGTAGCTGTTTTTAATTGTGAAGTCTCATTGTGGATCATGATGACCTATTTTTGGGCAATACAGAGGGAGAGGACTCCAATATTTTTATGgtcctttttatatatatacacacatatatatatctatctatcaatgtgttgttgttgtcgtcatttagaaaaagaaaaaagtatactgtacaatgtttttttaaatgaaaacatggTGGTTTCAAATATAAGAGACAGAAATGTAACTGTAAATATACGTCACCGCATATTAACCAGTTCAGACTTATTTTTctgatggtttaaaaaaaatgtttaaaaaaatcagggTGAAATACAAATGTTTGACGCAATTATGGtggataaaaaagtaaaatactcCAGTAATAGATTATGATTTGTTCAATGACTGTAAACGCATAAGCTGAATCATCTGACAGGTGTAAAACCAGCATTTTCATGAGCTCAATCTTTCAGAAACGCCACTCCTGTCTAAAGCACACTGTGTGTAGTGATCAACGAAAGGACGTTTTGCTGTGTTCTGCACATTCTGACACTTTTATACTcctgagaaaagaaaaaagaaaaaaaaa

Function

GO:

id name namespace
GO:0005844 polysome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030826-25 Predicted to enable RNA binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of polysome. Predicted to be active in cytoplasm. Is expressed in cranial ganglion; diencephalon; hindbrain; tegmentum; and telencephalon. Orthologous to human MSI2 (musashi RNA binding protein 2).

Ensembl:

ensembl_id ENSDART00000132096

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005929 lncRNA upstream 21678 37478245 ~ 37478556 (+) True XLOC_002325
TCONS_00004420 lncRNA upstream 332783 37145098 ~ 37167451 (+) True XLOC_002320
TCONS_00005928 lncRNA upstream 435844 37012191 ~ 37064390 (+) True XLOC_002317
TCONS_00005927 lncRNA upstream 436300 36805073 ~ 37063934 (+) False XLOC_002317
TCONS_00005728 lncRNA downstream 81395 37865419 ~ 37889561 (+) True XLOC_002327
TCONS_00005931 lncRNA downstream 241021 38025045 ~ 38034835 (+) True XLOC_002330
TCONS_00005932 lncRNA downstream 648314 38432338 ~ 38433209 (+) True XLOC_002332
TCONS_00004449 lncRNA downstream 965242 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005729 lncRNA downstream 965328 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00004426 mRNA upstream 85011 37400838 ~ 37415223 (+) True XLOC_002324
TCONS_00004425 mRNA upstream 105277 37268854 ~ 37394957 (+) True XLOC_002323
TCONS_00004424 mRNA upstream 243245 37182626 ~ 37256989 (+) True XLOC_002322
TCONS_00004423 mRNA upstream 246215 37181780 ~ 37254019 (+) False XLOC_002322
TCONS_00004422 mRNA upstream 272855 37173029 ~ 37227379 (+) False XLOC_002322
TCONS_00004432 mRNA downstream 143076 37927100 ~ 37928125 (+) True XLOC_002328
TCONS_00004434 mRNA downstream 197447 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004433 mRNA downstream 197447 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004435 mRNA downstream 208502 37992526 ~ 38005573 (+) False XLOC_002329
TCONS_00004436 mRNA downstream 216037 38000061 ~ 38005573 (+) True XLOC_002329
TCONS_00004421 other upstream 352450 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 539544 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004403 other upstream 831200 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004398 other upstream 1057387 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 1211731 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004438 other downstream 704684 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 764065 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004447 other downstream 899642 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004472 other downstream 1908353 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 1976730 39760754 ~ 39760879 (+) True XLOC_002356

Expression Profile

//