RNA id: XM_036949120.1


Basic Information

Item Value
RNA id XM_036949120.1
length 3061
RNA type mRNA
GC content 0.44
exon number 3
gene id LOC110508387
representative False

Chromosome Information

Item Value
chromosome id NC_048581.1
NCBI id CM023235.2
chromosome length 95212422
location 16564951 ~ 16674565 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome
species rainbow trout
(Oncorhynchus mykiss)

Sequence

TTTTATAGATCACGTCAAATGTTATCCAGGAACTTTCTGAAGTAATATTAGGCTACATGAGACGTTTATTTGTTCTAACTTATTTAAGTTTTGATATTTAAATAGATGTTCGATTGCTCTGGTCTAGGGGCGCATCAGTCGCAGCCTTGAGAATCGGATTTTTTTCTCAGCAACTCCCTAGTCATTATCTGAACACTACAACAAAGTAGTTCAACTGTACCCTACAACATgtcatgccatacaaataaacaATAGCTTCCACAATGGATCGGGACAAAGCTAGCCCGTCCCCCTTCACCCCTCTGGAGTCCCCAGGTCAAATGTCTCCCTGTACATTACTGCTGGGTCTGGTCGACTGCAGAAAAACACCGGGGCAGAGCGGAactgagagaggagaagaggaacatGGAGATGTGATTTCATTACGGGACATCCCTCATCGTTGCTCTCTCAGTGGGAGGGGCTTATCATCTGGGGCACCTCGACAACGTCATGATGCTGACGAGAAAGAGCAGAGTCCCTCCAGATCAGAAGacctcaagaaacaccagcagagagGTATAGGGAAGAAACCTCACCACTGCTGctttgactgtgggaagagttttgctaaACAGAAGGAATTGATCATTCATGAGCGGATTCACACCGGTGAGAAACTGtaccactgctctcagtgtgggaagagtttagCTGATTCTAAAACCTTAAATTCTCATCAGAAAATTCATACAGGTGAGATACCGTACCCCTGCTTTGATTGTGGGAAATACCTCAATCAATCAGGAGCCCAGacaacacacaaacacgtacACTCAAGAGAGAAACCTTAtcgctgtgatcagtgtgggaagtgCTTTAGTCGATCAGGAGACCTGACTAGACACCAatgtatacacacaggagagaagtctTATacctgtgatcagtgtgggaagagctttaaTAAATCAGGACACCTGACTATACAcgaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaagggCTTCAGTCGATCAGGAGACCTGACTAgacaccaacgcatacacacaggagagaagccttatcgctgtgatcagtgtgggaagagcttcaataATTCAGGACAACTGACTAcacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaagagcttcattCGATCAGGAGACCTGACTACACACAAACGcctacacacaggagagaagccttacagctgtgatcagtgtgggaagagcttcaatcagTCAGGACACCTGACTTtacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaagagctttgctcgAGATTTCACTCTGACtacacaccagcgaacacacagaggagataagccttatagctgtgatcagtgtgggaagagctttgctcgAGATTCCACCCTGACGAcacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaagagcttcaatcatTCAGGATCCCTGATTAtacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaaaagcttcaatcATTCAGGATCCCTGACTGaacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaaaagcttcaatcATTCAGGATCGCTGACTACACAcaaacgcatacacacaggagagaagccttatagctgtcatcagtgtgggaagagcttcaatcaaTCCGGAGACCTGACTACACACCAACGcctacacacaggagagaagccatatagctgtgatcagtgtgggaagagcttcaatcagTCAGGACACCTGACCAcacaccaacgcatacacacaggagagaagccttatagctgtgatcagtgtgggaagagcttcattCAATCAGTAGAGCTGACTAGACACCAgcgaatacacactggagagaaatctTATTCCTGTCTTTGTGGAAAGTGGTTTGCTCATTCAGGGTCACTGATAAAACACCAGGAAGTACAAACATGTCTTTCATCTCCCTTCTCTCTGGCACCGGTTCCAGATCCCTAAATACAGTTTCAATAGAAAACATCTTGTGAAGAGTCATCCATCTCCCATTCGCTAACAGTTTACTAAGTCTGATTACCATGGTAACCTGTGTAGCATGATATGCAGCTCTGGATCCATATTTCTCAAGCGTCTTGAAGTAGTAGTCCTGTGTGTGTCGTGGGGTGTTCAGAGCTGTATCTATTTCATTAACTCCTACTATCCATTAAAACATGTAGAATAATGTTTAAAAAATGGTAGGTGCACATTCATGTGTGATGGAAATGTTGTCTGAAGAGAGAGCCTTGAATTGTAGATCATGTCTCATACAAACATTGGTTCCTGTAGGTGATGGGGGACAAGGTCATGACCCCCTCAGACCTTTTGGCAGAATGTCCAGAATATGTTCTATAAGTTAAGATAGGAGACGGTCATGACCCCCTCAGACCCTTTGGCAGAATGCCCAGAATATGTTCTATAAGTTAAGATAGGAGACGGTTCCAGTCACATGCAGGATCCAAACGTTAATGATGAACAatgtaaatcatgcaaatataacttgtctgtgttaGCAGTGTATAagagaactaacgggactgccccgAAAGAGCTCCTGACCGACGTGTACTATGGTGCATCAAGTTTGTTGGAATCTCTCCAGCTTGCTGATAAtaaagaatgattcatttcagtttGACTTTGAGGCTTTGGTGGTAATTTCCATGACACGTATTCAATACAAAAACAAattatgtgaaggagatgtgtcgcgctgcatgaggcactGACTGATACTGAGGCACTGACTGGCACTGATACTGACTACCTTTTTTTAAGGGatctatgaccaacagatgcatatctgtaatcccagtcatgtgaaatccattgattagggtCTAATTCATTTAGAACAGTTTACTGATTtgtttatatgaactgtaactcagtaaaatctaacaaat

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU1630395 lncRNA downstream 21943 16607911 ~ 16631071 (-) True G1424143
TU1630380 lncRNA downstream 77247 16573798 ~ 16575767 (-) True G1424129
TU1630379 lncRNA downstream 78437 16573798 ~ 16574577 (-) False G1424129
TU1630318 lncRNA downstream 100326 16548237 ~ 16552688 (-) False LOC118940340
TU1630320 lncRNA downstream 100326 16548237 ~ 16552688 (-) True LOC118940340
TU1630344 lncRNA upstream 4900 16663592 ~ 16664169 (-) True G1424097
TU1630441 lncRNA upstream 32656 16691348 ~ 16691617 (-) True G1424186
TU1630442 lncRNA upstream 34185 16692877 ~ 16693163 (-) True G1424187
TU1630443 lncRNA upstream 37893 16696585 ~ 16696812 (-) True G1424188
TU1630451 lncRNA upstream 54067 16712759 ~ 16712978 (-) True G1424192
XM_036949131.1 mRNA downstream 64318 16583991 ~ 16588696 (-) False LOC110508387
XM_036949123.1 mRNA downstream 64507 16564951 ~ 16588507 (-) False LOC110508387
XM_036949124.1 mRNA downstream 82754 16564951 ~ 16570260 (-) False LOC110508387
XM_036949127.1 mRNA downstream 82796 16564951 ~ 16570218 (-) False LOC110508387
XM_036949129.1 mRNA downstream 82934 16564951 ~ 16570080 (-) False LOC110508387
XM_036949118.1 mRNA upstream 7187 16665879 ~ 16674565 (-) False LOC110508387
XM_036949146.1 mRNA upstream 38619 16697311 ~ 16701394 (-) False LOC110495074
XM_036949145.1 mRNA upstream 38619 16697311 ~ 16701395 (-) False LOC110495074
XM_036949147.1 mRNA upstream 38619 16697311 ~ 16701395 (-) False LOC110495074
XM_036949148.1 mRNA upstream 38619 16697311 ~ 16701395 (-) False LOC110495074
TU1630234 other downstream 238155 16412058 ~ 16414859 (-) False G1424038
TU1630255 other downstream 242886 16406731 ~ 16410128 (-) False G1424051
TU1630257 other downstream 242886 16406731 ~ 16410128 (-) False G1424051
TU1630259 other downstream 242886 16406731 ~ 16410128 (-) True G1424051
TU1630241 other downstream 282571 16369757 ~ 16370443 (-) True G1424040
TU1630513 other upstream 111745 16770437 ~ 16772957 (-) True G1424234
TU1630504 other upstream 192059 16850751 ~ 16851486 (-) True G1424227
TU1630482 other upstream 196785 16855477 ~ 16938699 (-) True G1424218
TU1630535 other upstream 304938 16963630 ~ 16968355 (-) True LOC110494935
TU1630918 other upstream 798237 17456929 ~ 17457504 (-) True G1424547

Expression Profile