RNA id: TCONS_00004431


Basic Information

Item Value
RNA id TCONS_00004431
length 493
lncRNA type retained_intron
GC content 0.42
exon number 6
gene id XLOC_002326
representative True

Chromosome Information

Item Value
chromosome id NC_007121.7
NCBI id CM002894.2
chromosome length 45420867
location 37500234 ~ 37784024 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GCGTATCAGCGAAACATACAAGAGTGCTTTTTGTCTGCTGTCACCATTTTTTCCTGCCTCTTCTGTGGTTATCTCCTGACCTTCACTGTGTTTCGTGTTTTTATTCCACAGAGGGTTTGGCTTCATCACGTTTGCAGATGTTTCCAGTGTAGATAAAGTCTTAGCTCAACCACACCACGAATTAGACTCCAAGACGATTGATCCTAAGGTCGCCTTTCCTCGACGTGCTCAACCCAAGATGGTCACAAGAACAAAGAAAATCTTTGTGGGTGGATTATCAGCGAGCACAGTGGTCGAAGATGTGAAGCAGTATTTTGAACAGTTCGGAAAGGTAGAGGATGCCATGCTAATGTTTGATAAAACTACAAACAGACATAGAGGCTTCGGCTTCGTAACGTTCGAGAATGAAGACATTGTAGAGAAAGTCTGTGAAATTCATTTTCAcgaaatcaataataaaatggTAGAATGTAAGAAGGCTCAACCAAAGGAG

Function

GO:

id name namespace
GO:0005844 polysome cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030826-25 Predicted to enable RNA binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of polysome. Predicted to be active in cytoplasm. Is expressed in cranial ganglion; diencephalon; hindbrain; tegmentum; and telencephalon. Orthologous to human MSI2 (musashi RNA binding protein 2).

Ensembl:

ensembl_id ENSDART00000141183

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00005929 lncRNA upstream 25300 37478245 ~ 37478556 (+) True XLOC_002325
TCONS_00004420 lncRNA upstream 336405 37145098 ~ 37167451 (+) True XLOC_002320
TCONS_00005928 lncRNA upstream 439466 37012191 ~ 37064390 (+) True XLOC_002317
TCONS_00004414 lncRNA upstream 520238 36805085 ~ 36983618 (+) False XLOC_002317
TCONS_00005728 lncRNA downstream 136259 37865419 ~ 37889561 (+) True XLOC_002327
TCONS_00005931 lncRNA downstream 295885 38025045 ~ 38034835 (+) True XLOC_002330
TCONS_00005932 lncRNA downstream 703178 38432338 ~ 38433209 (+) True XLOC_002332
TCONS_00004449 lncRNA downstream 1020106 38749266 ~ 38760444 (+) False XLOC_002344
TCONS_00005729 lncRNA downstream 1020192 38749352 ~ 38751512 (+) False XLOC_002344
TCONS_00004426 mRNA upstream 88633 37400838 ~ 37415223 (+) True XLOC_002324
TCONS_00004425 mRNA upstream 108899 37268854 ~ 37394957 (+) True XLOC_002323
TCONS_00004424 mRNA upstream 246867 37182626 ~ 37256989 (+) True XLOC_002322
TCONS_00004423 mRNA upstream 249837 37181780 ~ 37254019 (+) False XLOC_002322
TCONS_00004422 mRNA upstream 276477 37173029 ~ 37227379 (+) False XLOC_002322
TCONS_00004432 mRNA downstream 197940 37927100 ~ 37928125 (+) True XLOC_002328
TCONS_00004434 mRNA downstream 252311 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004433 mRNA downstream 252311 37981471 ~ 38008370 (+) False XLOC_002329
TCONS_00004435 mRNA downstream 263366 37992526 ~ 38005573 (+) False XLOC_002329
TCONS_00004436 mRNA downstream 270901 38000061 ~ 38005573 (+) True XLOC_002329
TCONS_00004421 other upstream 356072 37147669 ~ 37147784 (+) True XLOC_002321
TCONS_00004415 other upstream 543166 36960576 ~ 36960690 (+) True XLOC_002318
TCONS_00004403 other upstream 834822 36662669 ~ 36669034 (+) False XLOC_002313
TCONS_00004398 other upstream 1061009 36439306 ~ 36442847 (+) False XLOC_002310
TCONS_00004384 other upstream 1215353 36287841 ~ 36288503 (+) True XLOC_002299
TCONS_00004438 other downstream 759548 38488708 ~ 38488829 (+) True XLOC_002333
TCONS_00004441 other downstream 818929 38548089 ~ 38548205 (+) True XLOC_002336
TCONS_00004447 other downstream 954506 38683666 ~ 38683780 (+) True XLOC_002342
TCONS_00004472 other downstream 1963217 39692377 ~ 39699487 (+) True XLOC_002355
TCONS_00004473 other downstream 2031594 39760754 ~ 39760879 (+) True XLOC_002356

Expression Profile

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