RNA id: TCONS_00046856


Basic Information

Item Value
RNA id TCONS_00046856
length 1382
lncRNA type inter_gene
GC content 0.37
exon number 2
gene id XLOC_023448
representative False

Chromosome Information

Item Value
chromosome id NC_007135.7
NCBI id CM002908.2
chromosome length 42172926
location 22878941 ~ 23218030 (-)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GTTTAAGGAGACAGAAAGCAGTGGGAGAGCAGAAGGGGAACACGATCACGAAAAGACCTCAGGCCAGAACTCAGGAGTGCCAAGACTTTGGCTCAGGCAATATCAGGTGTGACGCGCCGGGCCTGGTGTGAGCCTCCGTCCATTGTCCTGCCGAACACACATCCCGCTCCCTGGAGAATAGCCTCCTCTCCCCGGCCGCGCCAATCCCAGGACAGAAAACTCGCAACAAAAGGTGAAAATGAGTGTAAATTGCAGTTATTTTTCCATCCTTTCCTTTTGTAATTTGAACACTTTTTATCTGCTGGAGCAacgctttatatatttatttattttcttttctttttttttttttctaggagaAGGAGCTTGCTGACACCTTATTCACAGGGTTATGTGACGACGTCGGTTTCTGATTACTTCCAAATGGTGTTACGATGAAAATTGCGAACTTCGACCTGTGGAGCATCTTCATGTTCTTTGGTTTGTCTCAGCATTATTAACAATTTTACCTTGAGCAccgtttaattaaaaacattaggATTTTGTATCTATTTGGGAAAATATATTCTTCTATTAAGGACatgtaaaaaaatgaaagaacagAAAAGAACATACAGTATATGCTTCACAAAATACTATATACAGTAGTGGAAttagtattgaacacgtcaccatttttctcaaaaaacatatttttaaaggtgctgttgaatTTTTTCCCCAGATGTTAgtgacaaccaaagaaatccatatatgttAGGAAACTAATATTGATTAGTTTACAaaataagttatgtgtaataaaatgaaatgacacaggaaaaagtattgaacacatgaagaaggggaggtgtagaaagacagtgaaagGCCCAGACAGCAGTTGAAATCCCTCAGCAATTATTCAGCAAACCTCTGCCCTTCATCAATGTAAATTATTAAAAGCTCCTTTAGTCcagcatctacattatcaggatgataaagatgaaaccagaaTTGACAAATTAGCAccacaatgatccaaaacacagccaaggaaaatctcaaatgttttcagagaaagaaaatcaagttgcagaatggcccagccaatcacctgacctgaatccaatataaaaaagaaaatcaagatcagatttgacagacgagacccacagaaccatcaagatttttgcttctgttgaagtctgtaaaaaacttacacctgagcaatgcatgtgacttcattcccCATATTAGAGGCGCCTTTCAGCTGCCATTATTAAAAAGACTTTTACATAagctattaaatacatttcagtactTCAGTACATTATCCTTGTGttattcattgttattacacataacaatttttagttatgtttttatgcttgtattgtttg

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00046376 lncRNA downstream 122432 22750958 ~ 22756509 (-) True XLOC_023447
TCONS_00047179 lncRNA downstream 146940 22728464 ~ 22732001 (-) True XLOC_023444
TCONS_00047178 lncRNA downstream 147390 22690983 ~ 22731551 (-) False XLOC_023444
TCONS_00046373 lncRNA downstream 177343 22690983 ~ 22701598 (-) False XLOC_023444
TCONS_00046370 lncRNA downstream 729073 22123886 ~ 22149868 (-) False XLOC_023444
TCONS_00046377 lncRNA upstream 45993 22969054 ~ 22992203 (-) False XLOC_023448
TCONS_00047184 lncRNA upstream 101715 23024776 ~ 23218019 (-) False XLOC_023448
TCONS_00046378 lncRNA upstream 101819 23024880 ~ 23079577 (-) False XLOC_023448
TCONS_00046858 lncRNA upstream 138523 23061584 ~ 23178161 (-) False XLOC_023448
TCONS_00046379 lncRNA upstream 155679 23078740 ~ 23087895 (-) False XLOC_023448
TCONS_00046375 mRNA downstream 122375 22741533 ~ 22756566 (-) False XLOC_023447
TCONS_00046374 mRNA downstream 122433 22740543 ~ 22756508 (-) False XLOC_023447
TCONS_00046368 mRNA downstream 176924 22118804 ~ 22702017 (-) False XLOC_023444
TCONS_00046369 mRNA downstream 344982 22122237 ~ 22533959 (-) False XLOC_023444
TCONS_00046364 mRNA downstream 775356 22070290 ~ 22103585 (-) False XLOC_023443
TCONS_00046384 mRNA upstream 318383 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046383 mRNA upstream 318383 23241444 ~ 23323526 (-) False XLOC_023449
TCONS_00046385 mRNA upstream 319253 23242314 ~ 23320223 (-) True XLOC_023449
TCONS_00046390 mRNA upstream 723583 23646644 ~ 23671709 (-) False XLOC_023452
TCONS_00046391 mRNA upstream 724725 23647786 ~ 23671383 (-) False XLOC_023452
TCONS_00046372 other downstream 506841 22371986 ~ 22372100 (-) True XLOC_023446
TCONS_00046371 other downstream 569883 22308944 ~ 22309058 (-) True XLOC_023445
TCONS_00046365 other downstream 781178 22071221 ~ 22097763 (-) True XLOC_023443
TCONS_00046358 other downstream 910825 21964050 ~ 21968116 (-) False XLOC_023436
TCONS_00046357 other downstream 915773 21963052 ~ 21963168 (-) True XLOC_023437
TCONS_00046386 other upstream 350181 23273242 ~ 23273359 (-) True XLOC_023450
TCONS_00046400 other upstream 1047995 23971056 ~ 23977285 (-) False XLOC_023458
TCONS_00046409 other upstream 1179660 24102721 ~ 24118395 (-) False XLOC_023462
TCONS_00046414 other upstream 1212841 24135902 ~ 24163110 (-) False XLOC_023462
TCONS_00046415 other upstream 1212867 24135928 ~ 24146875 (-) True XLOC_023462